DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT2G17140

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_001325411.1 Gene:AT2G17140 / 816219 AraportID:AT2G17140 Length:874 Species:Arabidopsis thaliana


Alignment Length:615 Identity:126/615 - (20%)
Similarity:231/615 - (37%) Gaps:126/615 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 IKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVT 218
            ::.:.||...::.:.:|  ..::.....|:|.|||.::|...:.|....:..:..|||:.||...
plant   189 VRGYCKAGLTDKGLELL--NAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPD 251

  Fly   219 GGTYTSLFNACANAPSVSDGLAKAQILRENMLEKGY----EPNVKNYNAMIKAYGRCGDVDTAYM 279
            ..|:.|..:|......|.|.   ::|..:..|:: |    .||...||.|:|.:.:.|.::.|..
plant   252 IVTFNSRISALCKEGKVLDA---SRIFSDMELDE-YLGLPRPNSITYNLMLKGFCKVGLLEDAKT 312

  Fly   280 LADEMMERQLELNADTFNFLLQACASNSEHG-FRHALLTWHNMLQRGISPDYYSFNAMLRCARD- 342
            |.:.:.|.....:..::|..||...   .|| |..|......|..:||.|..||:|.::    | 
plant   313 LFESIRENDDLASLQSYNIWLQGLV---RHGKFIEAETVLKQMTDKGIGPSIYSYNILM----DG 370

  Fly   343 -CGFGDLDSMREVI-----DKIAPSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASE 401
             |..|.|...:.::     :.:.|.|.....:|.       ...||        .:::.|.:..:
plant   371 LCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLH-------GYCSV--------GKVDAAKSLLQ 420

  Fly   402 LELPNLLLPQPH-----------LGSLVALEEVTRP-HER---------FLLLGGLTG------- 438
            ..:.|..||..:           :|.:...||:.|. :|:         .:::.||.|       
plant   421 EMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKA 485

  Fly   439 --FLEHMKQH-----------------------NITPDIETFTAMLEVIPPTNAAEKQLLTFVRK 478
              .::.|:.|                       |..||:.|::.:|..:.......:....|...
plant   486 IEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEM 550

  Fly   479 IG--LKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYG--VLALGCRTQ-EEARE 538
            :|  |:.|...:||.|.....:....||..||..:...|....:.||.  :|.||.:.| .|...
plant   551 MGEKLQPDSVAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHG 615

  Fly   539 LLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPN--------EAFLRHLHN 595
            |:::|...||..|:......::..|..:.......::...:::.:.||        |||.: :.:
plant   616 LMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCK-VPD 679

  Fly   596 FHRGCARAIDARHPSTKTAAFKKGHSKFCDKYRLYYEEQGLSG--LKLEDAIAKVKERPYDQFKL 658
            |        |......:||....|..:  ..|.|.:.|...:|  ||..:.:..|.:|.::....
plant   680 F--------DMAQEVFETAVSICGQKE--GLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTF 734

  Fly   659 PPVNGMEPL-KHEQLK------HKTKQRKY 681
            ...:.:|.| |.::|:      ||...|.|
plant   735 LYKDLVESLCKKDELEVASGILHKMIDRGY 764

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 9/38 (24%)
PPR_2 182..231 CDD:289786 15/48 (31%)
PPR 185..215 CDD:279828 8/29 (28%)
PPR repeat 186..213 CDD:276811 8/26 (31%)
PPR repeat 219..252 CDD:276811 7/32 (22%)
PPR_1 252..284 CDD:289614 10/35 (29%)
PPR_2 256..304 CDD:289786 13/47 (28%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 8/31 (26%)
PPR repeat 330..357 CDD:276811 7/33 (21%)
PPR repeat 485..514 CDD:276811 7/28 (25%)
PPR repeat 552..576 CDD:276811 1/23 (4%)
AT2G17140NP_001325411.1 PLN03081 57..627 CDD:215563 98/465 (21%)
PPR repeat 77..104 CDD:276811
PPR repeat 114..141 CDD:276811
PPR repeat 149..176 CDD:276811
PPR repeat 182..211 CDD:276811 3/23 (13%)
PPR repeat 217..246 CDD:276811 9/28 (32%)
PPR repeat 252..279 CDD:276811 6/29 (21%)
PPR repeat 293..320 CDD:276811 7/26 (27%)
PPR repeat 328..355 CDD:276811 8/29 (28%)
PPR repeat 361..390 CDD:276811 7/32 (22%)
PPR repeat 396..425 CDD:276811 5/43 (12%)
PPR repeat 431..460 CDD:276811 4/28 (14%)
PPR repeat 466..493 CDD:276811 3/26 (12%)
PPR repeat 526..553 CDD:276811 3/26 (12%)
PPR repeat 559..588 CDD:276811 7/28 (25%)
PPR repeat 594..623 CDD:276811 9/28 (32%)
PPR_2 627..676 CDD:404055 7/48 (15%)
PPR repeat 629..658 CDD:276811 1/28 (4%)
PPR repeat 664..688 CDD:276811 5/32 (16%)
PPR repeat 733..762 CDD:276811 6/28 (21%)
PPR repeat 768..797 CDD:276811
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 104 1.000 Inparanoid score I2129
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.960

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