DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and Ptcd1

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:XP_006248933.1 Gene:Ptcd1 / 304278 RGDID:1311473 Length:686 Species:Rattus norvegicus


Alignment Length:726 Identity:209/726 - (28%)
Similarity:329/726 - (45%) Gaps:120/726 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MALRLISRSMS-CHIRGLQLNATGRRLNSYNISRLVILPAT-WSCSQNRLLHVRITDQQAGLETK 63
            |.|..:||..| .|..||.:           :.||.:|.:| |:..:.....:|.....:....|
  Rat     1 MDLLRLSRLFSGPHPIGLSV-----------LQRLDLLRSTQWTGGREGPAWLRAASCSSSSHQK 54

  Fly    64 R------EANRNQNPFREEVFEELITAAPKEHQKFKPEKKPKEKSTKKVQDFGDPDTFGDAKVAA 122
            |      :::....|..||..|...|.:    :||. .::...|||.::.:.            .
  Rat    55 RMSSLCSDSSTPVAPQEEEEEESFGTLS----EKFS-SRRIFHKSTAQLYNL------------K 102

  Fly   123 TEDPGDVEEEEFLSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRMLKEDRAKPDKYIY 187
            .::.| ||||| |....|:..:.....|..|.|..||..:|.||:.:.|::||||:|.:|.:..|
  Rat   103 LKEQG-VEEEE-LEPRLRQGGRNTPYWYFLQCKRLLKEGKLAEALDLFERQMLKEERLQPLECNY 165

  Fly   188 NLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLAKAQILRENMLEK 252
            .:||.||.:.||.:|||.|:..|::|.|:.:..|||:|||.||.:|.....|..|..||:.:..:
  Rat   166 TVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPWKDSALQSALKLRQQLQAQ 230

  Fly   253 GYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACASNSEHGFRHALLT 317
            .::.|:|.|:|::|...:|.|:.....:..|::::...:..:||.|||..|..:.:.|||.|:..
  Rat   231 NFQLNLKTYHALLKVAAKCADLRVCLEVFKEIIQKGHAVTEETFCFLLMGCIQDKKTGFRQAMQV 295

  Fly   318 WHNMLQRGISPDYYSFNAMLRCARDCGFGD--------LDSMREVIDKIAPSAARK--------- 365
            |..||..||.|..:.:|.:|..|||||.||        |.|..|.| .:.|...|:         
  Rat   296 WRQMLSLGIKPSRHGYNLLLGAARDCGLGDPEVASRLLLTSQEETI-LLQPPTGRRLAGGKVQAK 359

  Fly   366 -------KPVLQLEK-------GQQDDLPSVEANTTTLPAQIEVATTAS---------------E 401
                   |.|..||:       .:.:..|:......|...|.||.|.|.               :
  Rat   360 TRHGVSVKHVEALERQLFLEPSHKLEGPPAFPEARETSRTQPEVETKAEPGHMGALAPLALKPPD 424

  Fly   402 LELP-NLLLPQPHLGSL----VALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEV 461
            |||. |||    .||:|    |:...|..|.:|..|:|||.|||..|.:|.:.|||:|.|.:.||
  Rat   425 LELQVNLL----SLGALSPAVVSFGTVATPADRLALMGGLEGFLGKMAEHRLQPDIKTLTLLAEV 485

  Fly   462 IPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVL 526
            :.|.:.||..||:.:.:..::|||.|||.||:|:|...|.|.||.:|.::...|:.|::.|:..|
  Rat   486 VEPGSPAESSLLSILDRHRVEADITFFNTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNL 550

  Fly   527 ALGCRTQEEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEAFLR 591
            |:||....:..:||..|..:.:..|..|...::........::|:..|::......:..||..:|
  Rat   551 AIGCHRPRDGMQLLADMKKSQVTPNTHIYSTLINAALKKLDYTYLISILKDMRRNSVPVNEVVIR 615

  Fly   592 HLHNFHRGCARAIDARHPST------KTAAFKKGHSKFCDKYRLYYEEQGLSGLKLEDAIAKVKE 650
            .|.         ..|::|.|      |....:|     .|.:|.|| :|.|..:..|:     ..
  Rat   616 QLE---------FAAQYPPTFDRYKEKNTYLEK-----IDGFRAYY-KQWLKVMPAEE-----PP 660

  Fly   651 RPYDQFKLPPV 661
            .|:.:|:..||
  Rat   661 HPWQEFRDKPV 671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 17/38 (45%)
PPR_2 182..231 CDD:289786 22/48 (46%)
PPR 185..215 CDD:279828 13/29 (45%)
PPR repeat 186..213 CDD:276811 12/26 (46%)
PPR repeat 219..252 CDD:276811 13/32 (41%)
PPR_1 252..284 CDD:289614 7/31 (23%)
PPR_2 256..304 CDD:289786 13/47 (28%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 13/30 (43%)
PPR repeat 330..357 CDD:276811 13/34 (38%)
PPR repeat 485..514 CDD:276811 13/28 (46%)
PPR repeat 552..576 CDD:276811 3/23 (13%)
Ptcd1XP_006248933.1 PLN03218 <120..>322 CDD:215636 71/201 (35%)
PPR_2 165..208 CDD:404055 20/42 (48%)
PPR repeat 165..191 CDD:276811 12/25 (48%)
PPR repeat 197..230 CDD:276811 13/32 (41%)
PPR repeat 236..265 CDD:276811 7/28 (25%)
PPR repeat 271..302 CDD:276811 13/30 (43%)
PPR repeat 512..538 CDD:276811 11/25 (44%)
PPR repeat 544..570 CDD:276811 8/25 (32%)
PPR_2 <556..585 CDD:404055 5/28 (18%)
PPR repeat 576..605 CDD:276811 3/28 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 139 1.000 Domainoid score I4702
eggNOG 1 0.900 - - E33208_3BFSV
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H33161
Inparanoid 1 1.050 253 1.000 Inparanoid score I3125
OMA 1 1.010 - - QHG54853
OrthoDB 1 1.010 - - D195242at33208
OrthoFinder 1 1.000 - - FOG0007295
OrthoInspector 1 1.000 - - oto95696
orthoMCL 1 0.900 - - OOG6_106729
Panther 1 1.100 - - LDO PTHR24014
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X5397
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.880

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