DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4611 and AT5G18475

DIOPT Version :9

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:NP_974803.1 Gene:AT5G18475 / 2745987 AraportID:AT5G18475 Length:506 Species:Arabidopsis thaliana


Alignment Length:559 Identity:103/559 - (18%)
Similarity:204/559 - (36%) Gaps:172/559 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 TAAPKEHQKFK------------PEKK-----PKEKSTKKVQDFGDPDT-FGDAKVAAT-----E 124
            |:...||::|.            .|||     |.|.|...|:.  :|.| |...:.|.:     .
plant     5 TSIINEHRRFSSSSRSWVSPICFSEKKKKPSPPPESSISPVET--NPKTKFISHESAVSLMKRER 67

  Fly   125 DPGDV--------EEEEFLSNSTR---------RSKKLKAVEYARQIKDHLKANRLNEAIAVLEQ 172
            ||..|        :::.|..|:..         |.||..||:                  |:|.|
plant    68 DPQGVLDIFNKASQQKGFNHNNATYSVLLDNLVRHKKFLAVD------------------AILHQ 114

  Fly   173 RMLKEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSL--FNACAN--AP 233
              :|.:..:..:.::..|:...:::....|...::..     :||......||  .:.|.|  ..
plant   115 --MKYETCRFQESLFLNLMRHFSRSDLHDKVMEMFNL-----IQVIARVKPSLNAISTCLNLLID 172

  Fly   234 SVSDGLAKAQIL--RENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLEL-NADT 295
            |....|::..:|  :.|:   |.:||...:|.::|.:.:.||::.|:::.:||....:.. |:.|
plant   173 SGEVNLSRKLLLYAKHNL---GLQPNTCIFNILVKHHCKNGDINFAFLVVEEMKRSGISYPNSIT 234

  Fly   296 FNFLLQACASNSEHGFRHALLTWHNMLQR-GISPDYYSFNAMLRCARDCGFGDLDSMREVIDKIA 359
            ::.|:....::|..  :.|:..:.:|:.: |||||..:||.|:.  ..|..|:::..::::|   
plant   235 YSTLMDCLFAHSRS--KEAVELFEDMISKEGISPDPVTFNVMIN--GFCRAGEVERAKKILD--- 292

  Fly   360 PSAARKKPVLQLEKGQQDDLPSVEANTTTLPAQIEVATTASELELPNLLLPQPHLGSLVALEEVT 424
                                                                             
plant   293 ----------------------------------------------------------------- 292

  Fly   425 RPHERFLLLGGLTGFLEHMKQHNITPDIETFTAMLEVIPPTNAAEKQLLTF--VRKIGLKADIDF 487
                             .||::...|::..::|::.........::...||  |:|.|||.|...
plant   293 -----------------FMKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVG 340

  Fly   488 FNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTYGVLALGCRTQ---EEARELLEQMHVAGIK 549
            :..|:.......:.:.|.::|..::.:..|.|.:||.|:..|..::   |||.::|:|....|:.
plant   341 YTTLMNCFCRNGETDEAMKLLGEMKASRCRADTLTYNVILRGLSSEGRSEEALQMLDQWGSEGVH 405

  Fly   550 MNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEA 588
            :|......:|...|.|.......:.:.:..|.|:.|:.|
plant   406 LNKGSYRIILNALCCNGELEKAVKFLSVMSERGIWPHHA 444

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PPR_2 <157..196 CDD:289786 5/38 (13%)
PPR_2 182..231 CDD:289786 7/50 (14%)
PPR 185..215 CDD:279828 2/29 (7%)
PPR repeat 186..213 CDD:276811 2/26 (8%)
PPR repeat 219..252 CDD:276811 8/38 (21%)
PPR_1 252..284 CDD:289614 8/31 (26%)
PPR_2 256..304 CDD:289786 12/48 (25%)
PPR repeat 258..287 CDD:276811 7/28 (25%)
PPR repeat 293..324 CDD:276811 5/30 (17%)
PPR repeat 330..357 CDD:276811 5/26 (19%)
PPR repeat 485..514 CDD:276811 3/28 (11%)
PPR repeat 552..576 CDD:276811 3/23 (13%)
AT5G18475NP_974803.1 PPR repeat 89..118 CDD:276811 9/48 (19%)
PLN03218 <94..>476 CDD:215636 83/468 (18%)
PPR repeat 124..148 CDD:276811 2/23 (9%)
PPR repeat 164..189 CDD:276811 5/24 (21%)
PPR repeat 198..225 CDD:276811 7/26 (27%)
PPR repeat 234..261 CDD:276811 5/28 (18%)
PPR repeat 270..297 CDD:276811 8/113 (7%)
PPR repeat 303..332 CDD:276811 4/28 (14%)
PPR repeat 338..365 CDD:276811 3/26 (12%)
PPR repeat 373..398 CDD:276811 8/24 (33%)
PPR repeat 408..437 CDD:276811 3/28 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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