DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4611 and ptcd1

DIOPT Version :10

Sequence 1:NP_647949.1 Gene:CG4611 / 38601 FlyBaseID:FBgn0035591 Length:703 Species:Drosophila melanogaster
Sequence 2:XP_002931567.1 Gene:ptcd1 / 100135205 XenbaseID:XB-GENE-940576 Length:685 Species:Xenopus tropicalis


Alignment Length:633 Identity:190/633 - (30%)
Similarity:300/633 - (47%) Gaps:92/633 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 RITDQQAGLETKREANRNQNP----FREEVFEELITAAPKEHQK--FKPEKKPKEKSTKKVQDFG 110
            :|:.:|......|| |.|.||    ..:|.|.   |.|.|...:  ||       |::.::|..|
 Frog    56 QISSRQRTFVLSRE-NNNTNPDVHSMEDETFG---TLAEKYSSRTFFK-------KTSPELQKLG 109

  Fly   111 DPDTFGDAKVAATEDPGDVEEEEFLSNSTRRSKKLKAVEYARQIKDHLKANRLNEAIAVLEQRML 175
            .            |:..|.||..:   ..|..::.....|..:.|..:|.::|.||:.:.|.:||
 Frog   110 H------------EEDNDGEEPNY---PIRWRQRNTPYWYFLKCKAKIKEDKLAEALELFEVKML 159

  Fly   176 KEDRAKPDKYIYNLLISGCAKAGYTRKAFFLYTKMRQRGLQVTGGTYTSLFNACANAPSVSDGLA 240
            :|:|.:||:..|.:||.||.:|||.:|||.||..|::|||..|..|||:||||||.:|....||.
 Frog   160 QEERLQPDESNYTILIGGCGRAGYVKKAFRLYADMKKRGLVPTDATYTALFNACAESPWKESGLQ 224

  Fly   241 KAQILRENMLEKGYEPNVKNYNAMIKAYGRCGDVDTAYMLADEMMERQLELNADTFNFLLQACAS 305
            :|..||:.:..|....|:..|.:::|....|.|:..:..:..|:::....:..||||.||.:|..
 Frog   225 QALKLRQELKAKNIRLNLVTYQSLLKVCALCSDLQNSMEIFKEIVQEGHIVTKDTFNILLMSCIK 289

  Fly   306 NSEHGFRHALLTWHNMLQRGISPDYYSFNAMLRCARDCGFGD-LDSMREVIDKIAPSAARKK--- 366
            |.:.|||:.|..|..||:.||.||..::|.:||..||||.|| .::...::....|:..|.|   
 Frog   290 NKDIGFRYTLQVWRQMLRLGIKPDNSTYNLLLRATRDCGIGDSAEASALLLSSKEPTPLRLKAKT 354

  Fly   367 ----------------PVLQLEK------------GQQDDLPSVE----ANTTTLPAQIE----- 394
                            .|..|||            ...|.:.:.|    .||.:.|.:.:     
 Frog   355 GKHIHGMKKKANTSELDVEMLEKQLFLSKSTQLRISDSDGVDTQENAKGVNTISHPPRSQEICDS 419

  Fly   395 -VATTASELELPNLLLPQPHLGSLVALEEVTRPHERFLLLGGLTGFLEHMKQHNITPDIETFTAM 458
             :.|:::.|.|||||....:...:|:|..|..|.:|..|:||:.|.::.|....:.|.|:|||.:
 Frog   420 LILTSSASLHLPNLLDEPANTNVIVSLGSVFTPSDRLALIGGMEGIIQKMHNDKVFPTIKTFTLL 484

  Fly   459 LEVIPPTNAAEKQLLTFVRKIGLKADIDFFNILIKKRSMRFDYESAKEVLLMIRTAGLRPDIVTY 523
            .|:|.|....|..|...:....:|||:.|||.||:|||...:..||||:|.::...|:.|:|.|:
 Frog   485 AEIIQPDCKRESALFNIMDSANVKADVTFFNTLIRKRSKLINLHSAKELLPILAQKGISPNIQTF 549

  Fly   524 GVLALGCRTQEEARELLEQMHVAGIKMNMPILGAMLRQGCANKSFSYVNEIIQLSLEEGLKPNEA 588
            ..||:.|...||..:|||.|..:|:..|..|...::........::|:.:|::...:..:.|||.
 Frog   550 CGLAISCHNAEEGLKLLEDMTNSGVIPNTYIYSTLISAAVKRLDYAYLLDILRDMKKRNVAPNEV 614

  Fly   589 FLRHLHNFHRGCARAIDARHPSTKTAAFKKGHSK--FCDK---YRLYY 631
            .:..|.         ..:::|..    :.|..||  |.:|   :|.||
 Frog   615 IIHQLE---------FASQYPPN----YDKYKSKDVFLEKIDGFRGYY 649

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4611NP_647949.1 PLN03218 <166..>561 CDD:215636 147/436 (34%)
PPR repeat 186..213 CDD:276811 14/26 (54%)
PPR repeat 219..252 CDD:276811 15/32 (47%)
PPR repeat 258..287 CDD:276811 5/28 (18%)
PPR repeat 293..324 CDD:276811 15/30 (50%)
PPR repeat 330..357 CDD:276811 9/27 (33%)
PPR repeat 485..514 CDD:276811 13/28 (46%)
PPR repeat 552..576 CDD:276811 3/23 (13%)
ptcd1XP_002931567.1 PLN03218 <139..>355 CDD:215636 83/215 (39%)
PPR repeat 171..197 CDD:276811 14/25 (56%)
PPR repeat 203..236 CDD:276811 15/32 (47%)
PPR repeat 242..271 CDD:276811 5/28 (18%)
PPR repeat 277..308 CDD:276811 15/30 (50%)
PPR repeat 314..344 CDD:276811 9/29 (31%)
PPR repeat 514..540 CDD:276811 12/25 (48%)
PPR repeat 546..572 CDD:276811 11/25 (44%)
PPR_3 564..>612 CDD:316342 9/47 (19%)
PPR repeat 578..607 CDD:276811 3/28 (11%)

Return to query results.
Submit another query.