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Protein Alignment CHMP2B and Chmp3

DIOPT Version :9

Sequence 1:	NP_647947.1	Gene:	CHMP2B / 38599	FlyBaseID:	FBgn0035589	Length:	212	Species:	Drosophila melanogaster
Sequence 2:	NP_758834.1	Gene:	Chmp3 / 282834	RGDID:	708556	Length:	223	Species:	Rattus norvegicus

Alignment Length:	222	Identity:	61/222 - (27%)
Similarity:	109/222 - (49%)	Gaps:	16/222 - (7%)

- Green bases have known domain annotations that are detailed below.

  Fly     5 IFGK---KPTVKEQQRENDRSLRKATRDIERERRKMEEEERKLELEIRRNAAAGNNDACRILAKQ 66
            :|||   ||. ||...|....:||..|.::|:.|.::.||.|::..::..|..|..:.|.:|||:
  Rat     3 LFGKTQEKPP-KELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKE 66

  Fly    67 LVEIRKQKSRTYAAAGKIQSIGYQNKNMGANIALSEAMGTTAKTMGEMNKVMRPEAIGETVRQFQ 131
            ::..||..|:.||:...:.|:....||..|.:.::.::..:.:.|..|..:::...|..|:|:..
  Rat    67 MIRSRKAVSKLYASKAHMNSVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELS 131

  Fly   132 AANMKMEMTDEMINDTLDDMLNESGDEEESNAVVNKVLDEIGIEISGKMSS---------IPATG 187
            ...||..:.:||:.||.:.|.::...||.:...::::|.||.....||..|         .||..
  Rat   132 KEMMKAGIIEEMLEDTFESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGA 196

  Fly   188 SSDFETSGKRTEKDI---ADQLAKLRS 211
            .:..|...:..|:|:   ..:||.|||
  Rat   197 MAASEGDEEDDEEDLEAMQSRLATLRS 223

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.