DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gdap1 and eEF1gamma

DIOPT Version :10

Sequence 1:NP_647945.1 Gene:Gdap1 / 38597 FlyBaseID:FBgn0035587 Length:327 Species:Drosophila melanogaster
Sequence 2:NP_652000.1 Gene:eEF1gamma / 44791 FlyBaseID:FBgn0029176 Length:431 Species:Drosophila melanogaster


Alignment Length:292 Identity:62/292 - (21%)
Similarity:98/292 - (33%) Gaps:100/292 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 KPVLFFHPYNFHAQKVLMVF-YE----KKIDFFPYVVDLCNGE-QYSNWFLNLNPKGDVPVLQDG 85
            |..|:.:|.||.|.|.|:.. |.    |..|.|.:      || ..|..||...|.|.||..:..
  Fly     3 KGTLYTYPENFRAYKALIAAQYSGAQVKVADNFKF------GETNKSAEFLKKFPGGKVPAFETA 61

  Fly    86 ALVIPSSTHIINYV--ESKFRGDRSLKPAHNSKEFDQMLIFEQAMARLPVGTLSLGSFIHDDLKL 148
            .....|.::.|.|:  ..:.||.:.  |            |.||..:..:      ||.  |.::
  Fly    62 EGQYLSESNAIAYLLANEQLRGGKC--P------------FVQAQVQQWI------SFA--DNEI 104

  Fly   149 VPKA-----PFIGPVRQSCLKNNEKVLDLLRHSVDEQATKKAALQHKLDIQLRRHELASSREEFQ 208
            ||.:     |.:|.:.|.  ||                                   :::::|.:
  Fly   105 VPASCAWVFPLLGILPQQ--KN-----------------------------------STAKQEAE 132

  Fly   209 KVLDAVRHFLLYVEQELTAQAPRVEWLTGDELSVADISLGLLLHRLYQLGFE-----------NQ 262
            .||           |:|..:.....:|.|:.:::|||.:...|..||:...|           ..
  Fly   133 AVL-----------QQLNQKLQDATFLAGERITLADIVVFSSLLHLYEYVLEPSVRSAFGNVNRW 186

  Fly   263 FWTFGKLPQVEAYFLRFRQRESFHRLQPSNFA 294
            |.|.....||:|....::..|......|..:|
  Fly   187 FVTILNQKQVQAVVKDYKLCEKALVFDPKKYA 218

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gdap1NP_647945.1 GstA 30..297 CDD:440390 61/289 (21%)
GST_C_family 178..285 CDD:470672 20/117 (17%)
eEF1gammaNP_652000.1 GST_N_EF1Bgamma 4..79 CDD:239342 23/80 (29%)
GST_C_EF1Bgamma_like 90..209 CDD:198290 32/174 (18%)
EF1G 273..376 CDD:459888
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.