DRSC/TRiP Functional Genomics Resources

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Protein Alignment AlaRS-m and ALA1

DIOPT Version :9

Sequence 1:NP_523932.2 Gene:AlaRS-m / 38595 FlyBaseID:FBgn0028962 Length:1012 Species:Drosophila melanogaster
Sequence 2:NP_014980.3 Gene:ALA1 / 854513 SGDID:S000005862 Length:958 Species:Saccharomyces cerevisiae


Alignment Length:1053 Identity:334/1053 - (31%)
Similarity:495/1053 - (47%) Gaps:174/1053 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 TAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPH-----KRV 72
            ||..:|.||||:|. :..||||:|||||||.|||:.|.||||||:|.:||||.....     ||.
Yeast    10 TATNVRNTFLDYFK-SKEHKFVKSSPVVPFDDPTLLFANAGMNQYKPIFLGTVDPASDFYTLKRA 73

  Fly    73 VNSQKCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRLY 137
            .|||||:|.|||||||..||.|.|||||||||||||||||||:||...:..||...|.|...|||
Yeast    74 YNSQKCIRAGGKHNDLEDVGKDSYHHTFFEMLGNWSFGDYFKKEAITYSWTLLTEVYGIPKDRLY 138

  Fly   138 VTYFAGDKVLGIPADLECFEIWRSLGFPASRILPFGCADNFWEMGATGPCGPCTEIHIDHRPDLG 202
            ||||.||:.||:..|.|..|:|:::|.|...|||....|||||||..||||||:|||.|.   :|
Yeast   139 VTYFEGDEKLGLEPDTEARELWKNVGVPDDHILPGNAKDNFWEMGDQGPCGPCSEIHYDR---IG 200

  Fly   203 SVEQRAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGFERLTAVLQNKSSNYDT 267
            . ...|.|||....|:.|:|||||||:||..|||:..|||.|:|||||||||.:|||:..|||||
Yeast   201 G-RNAASLVNMDDPDVLEVWNLVFIQFNREQDGSLKPLPAKHIDTGMGFERLVSVLQDVRSNYDT 264

  Fly   268 DLFTPIFDGIQQAAKTPVYSGSFPDGGNAAVLDTSYRILADHARMVTACLADGMLPDQNQK---L 329
            |:|||:|:.||:......|||:|.:.....: ||:||:||||.|.:|..||||.:|:...:   |
Yeast   265 DVFTPLFERIQEITSVRPYSGNFGENDKDGI-DTAYRVLADHVRTLTFALADGGVPNNEGRGYVL 328

  Fly   330 RRVLRKALNISEHVFAH--DKLLTQLVPIVVETLGEAYPEMAAKQQAVIDLICHEQEVYKNLRES 392
            ||:||:....:.....:  ....:.|.|.::..:.:.:||: ||..|.:..|..|:|.       
Yeast   329 RRILRRGARYARKYMNYPIGNFFSTLAPTLISQVQDIFPEL-AKDPAFLFEILDEEEA------- 385

  Fly   393 SSKAFAEVLMEFPNLDDIDLMECPGFVPAYRELQMQRCKFSNNTIPGDFLYKLTDTYGLTEESFL 457
               :||:.|.....|              :.:......|..:.|:.|..:::|.||||..     
Yeast   386 ---SFAKTLDRGERL--------------FEKYASAASKTESKTLDGKQVWRLYDTYGFP----- 428

  Fly   458 KLAELENMNCDLERYRAEVSLAKLKAKGNQRETAGGSLCDLATEQRIAEAQAMLTKRLTPTDNSH 522
                     .||....||....|:...|.::           .:|...||    :||....|.|.
Yeast   429 ---------VDLTELMAEEQGLKIDGPGFEK-----------AKQESYEA----SKRGGKKDQSD 469

  Fly   523 KYTYSFDKESDSYQIPPLKTRVLGMLLNDAEVSRT-----------QGSRIQ----QPFTDLIS- 571
            ....:..:.|:               ||||:|.:|           :|:.::    ..|.|.|: 
Yeast   470 LIKLNVHELSE---------------LNDAKVPKTNDEFKYGSANVEGTILKLHDGTNFVDEITE 519

  Fly   572 ------IVTAGSNFYYESGGQQSDGGKILVSNHQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTD 630
                  |:...:.||.|.|||:.|.|||::      |.....:|..|:..|..|.|...|    :
Yeast   520 PGKKYGIILDKTCFYAEQGGQEYDTGKIVI------DDAAEFNVENVQLYNGFVFHTGSL----E 574

  Fly   631 AFQLAIGDEVELQVDAQQRQLNTCHHTATHLLNAAIRSLFKKVTYQVSSSVSSDQCKLELGLLGK 695
            ..:|::||::....|..:|.....:||.||:||.|::........|..|.|:.::.:.:.. ..|
Yeast   575 EGKLSVGDKIIASFDELRRFPIKNNHTGTHILNFALKETLGNDVDQKGSLVAPEKLRFDFS-HKK 638

  Fly   696 RIQKTDVQLIEDLINRVICSAAPV---EVQLLSAAEVLEQNDITMVPGEVYPEQGLRLVNVESP- 756
            .:...:::.:||:.|..|.....|   |:.|..|..:   :.:..|.||.||:. :|:|:|..| 
Yeast   639 AVSNEELKKVEDICNEQIKENLQVFYKEIPLDLAKSI---DGVRAVFGETYPDP-VRVVSVGKPI 699

  Fly   757 ----------ELQLSSKELCCGTHATNTSELSCFCIVNLKQTNRARFAFTAVAGQAAENVLKTAA 811
                      |....|.|.|.|||...|.::..|.|:......:......||.|        |.|
Yeast   700 EELLANPANEEWTKYSIEFCGGTHVNKTGDIKYFVILEESGIAKGIRRIVAVTG--------TEA 756

  Fly   812 LLRHRVDLLEKQFQTDKLTNATEAELQTIRHNMLHT------DIKLPYAFKMDTLERITEMLKRI 870
            ....|   |.:||..| |..|.:.....|:...|..      .:.:....|.:..::..::.|.:
Yeast   757 FEAQR---LAEQFAAD-LDAADKLPFSPIKEKKLKELGVKLGQLSISVITKNELKQKFNKIEKAV 817

  Fly   871 KDSSRTTL----KEFVDVEMRTLLQEKPLDTHPFILHYI----TSSALVEEIPLQRATKLCPDRP 927
            ||..::..    |:.:| |::|..:..  :..|:::.:|    .:.|:.|.|...::.....|:.
Yeast   818 KDEVKSRAKKENKQTLD-EVKTFFETN--ENAPYLVKFIDISPNAKAITEAINYMKSNDSVKDKS 879

  Fly   928 ILVISVCD--SVVKARCCVPEKCITEKFNASAWLQSFADTFNGQ------IAAPKGQNPQAVCNM 984
            |.:::..|  ..|...|.:....:.:..:.||..:..:....|:      :....|..|.|:.:.
Yeast   880 IYLLAGNDPEGRVAHGCYISNAALAKGIDGSALAKKVSSIIGGKAGGKGNVFQGMGDKPAAIKDA 944

  Fly   985 KGRRVSNLFEEQL 997
            .. .:.:||:|:|
Yeast   945 VD-DLESLFKEKL 956

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlaRS-mNP_523932.2 PLN02900 13..1010 CDD:215487 334/1053 (32%)
AlaRS_core 14..261 CDD:238360 148/251 (59%)
tRNA_SAD 570..>667 CDD:298782 31/103 (30%)
tRNA_SAD 748..>784 CDD:197931 14/46 (30%)
ALA1NP_014980.3 PLN02900 7..946 CDD:215487 330/1040 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0013
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S431
OMA 1 1.010 - - QHG60684
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11777
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
76.830

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