DRSC/TRiP Functional Genomics Resources

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Protein Alignment AlaRS-m and LOC559142

DIOPT Version :9

Sequence 1:NP_523932.2 Gene:AlaRS-m / 38595 FlyBaseID:FBgn0028962 Length:1012 Species:Drosophila melanogaster
Sequence 2:XP_021323632.1 Gene:LOC559142 / 559142 -ID:- Length:290 Species:Danio rerio


Alignment Length:404 Identity:127/404 - (31%)
Similarity:171/404 - (42%) Gaps:143/404 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LTAREIRKTFLDHFTVNHGHKFVRSSPVVPFCDPTVAFVNAGMNQFKSVFLGTAAAPHKRVVNSQ 76
            |||.:||:.|:|.|. .|.|::|.||..:|..|||:.|.||||||                    
Zfish     5 LTAAQIREKFIDFFR-RHEHQYVHSSATIPLDDPTLLFANAGMNQ-------------------- 48

  Fly    77 KCVRVGGKHNDLSVVGTDGYHHTFFEMLGNWSFGDYFKREACAMALELLRGPYNIDPGRLYVTYF 141
                                                                             
Zfish    49 ----------------------------------------------------------------- 48

  Fly   142 AGDKVLGIPADLECFEIWRSLGFPASRILPFGCADNFWEMGATGPCGPCTEIHIDHRPDLGSVEQ 206
                                     |||||....|||||||.|||||||:|||.|.   :|. ..
Zfish    49 -------------------------SRILPGSMKDNFWEMGDTGPCGPCSEIHYDR---IGG-RD 84

  Fly   207 RAKLVNAGRSDLTELWNLVFIQYNRHADGSISQLPAHHVDTGMGFERLTAVLQNKSSNYDTDLFT 271
            .|.|||....:..|:|||||||:||.::..:..|....:|||||.|||.:|||||.||||||||.
Zfish    85 AAHLVNMDDPNELEIWNLVFIQFNRESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFV 149

  Fly   272 PIFDGIQQAAKTPVYSGSF----PDGGNAAVLDTSYRILADHARMVTACLADGMLPDQN------ 326
            |.|:.||:......|:|..    .||     :|.:||:||||||.:|..|.||..||..      
Zfish   150 PYFEAIQKGTGARAYTGKVSAEDTDG-----IDMAYRVLADHARTITIALYDGGRPDNTGRGGDA 209

  Fly   327 -QKLRR---VLRKALNISEHVFAHDKLLT---QLVPIVVETLGEA--YPE-MAAKQQAVIDL-IC 380
             .:||:   :::..:|..|..|.  |.|:   :::...:::|||:  .|| |.....:.:.| |.
Zfish   210 FPELRKDPYMVKDIINEEEAQFL--KTLSRGRRILDRKIQSLGESTTIPEGMLFTGASSLHLHIN 272

  Fly   381 HEQEVYKNLRESSS 394
            .||||...::.:|:
Zfish   273 GEQEVGDRVKSTSA 286

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlaRS-mNP_523932.2 PLN02900 13..1010 CDD:215487 126/403 (31%)
AlaRS_core 14..261 CDD:238360 72/246 (29%)
tRNA_SAD 570..>667 CDD:298782
tRNA_SAD 748..>784 CDD:197931
LOC559142XP_021323632.1 tRNA-synt_2c 6..>254 CDD:332954 116/369 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D129373at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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