DRSC/TRiP Functional Genomics Resources

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Protein Alignment AlaRS-m and cdc23

DIOPT Version :10

Sequence 1:NP_523932.2 Gene:AlaRS-m / 38595 FlyBaseID:FBgn0028962 Length:1012 Species:Drosophila melanogaster
Sequence 2:NP_957227.1 Gene:cdc23 / 393907 ZFINID:ZDB-GENE-040426-866 Length:579 Species:Danio rerio


Alignment Length:462 Identity:79/462 - (17%)
Similarity:156/462 - (33%) Gaps:149/462 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   361 LGEAYPEMAAKQQAVIDLICHEQEVYKNLRES----SSKAFAEVLMEFPNLDDIDLMECPGFVPA 421
            :...|.|:...::|:        :.|::|.|:    ||...:::.:.:.|:.|||..     :..
Zfish   217 MAHMYTELQMIKEAL--------QKYQSLMEAGFAKSSYIISQIAVAYHNIRDIDQA-----LYL 268

  Fly   422 YRELQMQRCKFSNNTIPGDFLYKLTDTYG--LTEESFL-KLAELENMNCDLERYRAEVSLAKLKA 483
            :.||:.|          ..|..:..||:.  |...|.. :|:.|.:...::::||.|.....   
Zfish   269 FNELREQ----------DPFRIENMDTFSNLLYVRSMKPELSYLAHNLVEIDKYRVETCCVI--- 320

  Fly   484 KGNQRETAGGSLCDLATEQRIAEAQAMLTKRLTP------TDNSHKYTYSFDKESDSYQIPPLKT 542
                     |:...|.::...|........:|.|      |...|:|   .:.::.|..|...:.
Zfish   321 ---------GNYYSLRSQHEKAALYFQRALKLNPRCLGAWTLMGHEY---MEMKNTSAAIQAYRH 373

  Fly   543 RVLGMLLNDAEVSRTQ-------GSR---IQQPFTDLISIVTAGSNFYYESGGQ-QSDGGKILVS 596
            .:        ||::..       |..   ::.||..|         :||....| :.:..::||:
Zfish   374 AI--------EVNKRDYRAWYGLGQTYEILKMPFYSL---------YYYRKAHQLRPNDSRMLVA 421

  Fly   597 NHQQPDHPHSLDVIGVKHLNDCVVHICKLSSPTDAFQLAIGDEVELQVDAQQRQLNTCHHTATHL 661
                              |.:|..   |||                    ||.:...|:..|..:
Zfish   422 ------------------LGECYE---KLS--------------------QQLEAKKCYWRAYSV 445

  Fly   662 LNAAIRSLFK--KVTYQVSSSVSSDQCKL----ELGLLGKRIQKTDVQLIEDLINRVICSAAPVE 720
            .:....:|.|  |:..|::.|..:.||.:    ::...|::::..:|......:.:........:
Zfish   446 GDVERMALLKLAKLHEQLNESDDAAQCYIIYIQDIFSCGEQLEHAEVSTALRYLGQYYFKNKLYD 510

  Fly   721 VQLLSAAEVLEQNDITMVPGEVYPEQG---LRLVNVESPELQLSSKELCCGTHATNTSELSCFCI 782
            ...|.|....:.||..        |:|   ||.::....:.:.||            ::||..|:
Zfish   511 EASLCAQRCCDYNDAR--------EEGKALLRQISAVREQGEPSS------------TDLSLPCV 555

  Fly   783 VNLKQTN 789
            .|....|
Zfish   556 FNPLSNN 562

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlaRS-mNP_523932.2 PLN02900 13..1010 CDD:215487 79/462 (17%)
cdc23NP_957227.1 ANAPC8 14..131 CDD:427675
TPR 215..>384 CDD:440225 37/212 (17%)
TPR 307..536 CDD:440225 50/309 (16%)
TPR repeat 314..342 CDD:276809 4/39 (10%)
TPR repeat 347..377 CDD:276809 5/40 (13%)
TPR repeat 382..410 CDD:276809 6/36 (17%)
TPR repeat 416..444 CDD:276809 11/68 (16%)
TPR repeat 450..473 CDD:276809 6/22 (27%)
Blue background indicates that the domain is not in the aligned region.

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