DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment AlaRS-m and LOC110439041

DIOPT Version :9

Sequence 1:NP_523932.2 Gene:AlaRS-m / 38595 FlyBaseID:FBgn0028962 Length:1012 Species:Drosophila melanogaster
Sequence 2:XP_021328949.1 Gene:LOC110439041 / 110439041 -ID:- Length:134 Species:Danio rerio


Alignment Length:122 Identity:66/122 - (54%)
Similarity:79/122 - (64%) Gaps:4/122 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   167 SRILPFGCADNFWEMGATGPCGPCTEIHIDHRPDLGSVEQRAKLVNAGRSDLTELWNLVFIQYNR 231
            |||||....|||||||.|||||||:|||.|.   :|. ...|.|||....:..|:|||||||:||
Zfish     4 SRILPGSMKDNFWEMGDTGPCGPCSEIHYDR---IGG-RDAAHLVNMDDPNKLEIWNLVFIQFNR 64

  Fly   232 HADGSISQLPAHHVDTGMGFERLTAVLQNKSSNYDTDLFTPIFDGIQQAAKTPVYSG 288
            .::..:..|....:|||||.|||.:|||||.||||||||.|.|:.||:......|:|
Zfish    65 ESETVLKPLSKKSIDTGMGLERLVSVLQNKMSNYDTDLFVPYFEAIQKGTGARAYTG 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AlaRS-mNP_523932.2 PLN02900 13..1010 CDD:215487 66/122 (54%)
AlaRS_core 14..261 CDD:238360 50/93 (54%)
tRNA_SAD 570..>667 CDD:298782
tRNA_SAD 748..>784 CDD:197931
LOC110439041XP_021328949.1 tRNA-synt_2c 3..>134 CDD:332954 66/122 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D129373at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

Return to query results.
Submit another query.