DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gen and RAD2

DIOPT Version :9

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_011774.1 Gene:RAD2 / 853174 SGDID:S000003490 Length:1031 Species:Saccharomyces cerevisiae


Alignment Length:351 Identity:83/351 - (23%)
Similarity:131/351 - (37%) Gaps:120/351 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 AKRN---------ELQFRGVKPK-NSPECTQSQPSKGDKGRSRFNHVLKQCETLLLSMGIQCVQG 140
            |:||         ||..:.:|.| :|.|.|..              ::|:.:.||...||..:..
Yeast   739 AERNVAENAFVEDELFEQQMKDKRDSDEVTMD--------------MIKEVQELLSRFGIPYITA 789

  Fly   141 PGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSR 205
            |.||||.||.|.:..||||:|:.|||.|.:|..::|:|.....        ..|:.||...|...
Yeast   790 PMEAEAQCAELLQLNLVDGIITDDSDVFLFGGTKIYKNMFHEK--------NYVEFYDAESILKL 846

  Fly   206 MDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEILDRMRSW--RGETDKYNALEI 268
            :...::.:|.:|.|.|.|| .:|:.|:|....:::..::..   |...:.|  .|:.||      
Yeast   847 LGLDRKNMIELAQLLGSDY-TNGLKGMGPVSSIEVIAEFGN---LKNFKDWYNNGQFDK------ 901

  Fly   269 RVDDKSICSNCGHIGKTQSHTKSGCSVCRTHKGCDESLWKEQRLSIKSELTLRRK-----ALLSP 328
                                                   ::|....|.|..||:|     .:|..
Yeast   902 ---------------------------------------RKQETENKFEKDLRKKLVNNEIILDD 927

  Fly   329 DFPNEEIIAEFLS---EPDTIPNLNLNWRQPN---LVKFIK-QIGHLLQWPEIYCFQKFFPILTR 386
            |||:..:...::.   :.||.|.:   |..|:   |..|:| |:|    ||              
Yeast   928 DFPSVMVYDAYMRPEVDHDTTPFV---WGVPDLDMLRSFMKTQLG----WP-------------- 971

  Fly   387 WQVQQSKQEKILIQPHEIIKKRTVKG 412
                ..|.::|||.....:.||..||
Yeast   972 ----HEKSDEILIPLIRDVNKRKKKG 993

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 1..385 CDD:189039 75/322 (23%)
H3TH_GEN1 210..342 CDD:188625 24/141 (17%)
RAD2NP_011774.1 rad2 1..1030 CDD:273166 83/351 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0258
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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