DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gen and Fen1

DIOPT Version :10

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:XP_006231134.1 Gene:Fen1 / 84490 RGDID:621821 Length:405 Species:Rattus norvegicus


Alignment Length:389 Identity:93/389 - (23%)
Similarity:158/389 - (40%) Gaps:111/389 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 GVKELWGVLTPHCERKPINELR---GKKVAIDLAGWVCESLNVVDYFVHPRH------------- 50
            |:.:|...:.|...|:  |:::   |:|||||      .|:::..:.:..|.             
  Rat    30 GLAKLIADVAPSAIRE--NDIKSYFGRKVAID------ASMSIYQFLIAVRQGGDVLQNEEGETT 86

  Fly    51 -HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDK 114
             ||..:|:||..::...:.||::.:|..|:|||..:|||:|.:....|     :..|:|.:..::
  Rat    87 SHLMGMFYRTIRMMENGIKPVYIFDGKPPQLKSGELAKRSERRAEAEK-----QLQQAQEAGAEE 146

  Fly   115 GRSRFN----HVLKQ----CETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYG 171
            ...:|.    .|.||    |:.||..|||..:..|.||||.||.|.|.|.|....::|.||..:|
  Rat   147 EVEKFTKRLVKVTKQHNDECKHLLSLMGIPYLDAPSEAEASCAALAKAGKVYAAATEDMDCLTFG 211

  Fly   172 AVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDG 236
            :..:.|:.:     |..|....:..:.:..:...:...|::.:.:.:|.|.||| :.:.|||...
  Rat   212 SPVLMRHLT-----ASEAKKLPIQEFHLSRVLQELGLNQEQFVDLCILLGSDYC-ESVRGIGPKR 270

  Fly   237 VLKLFNKYKETEILDRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHKG 301
            .:.|..|:|..|.:.|    |.:..||...|                                  
  Rat   271 AVDLIQKHKSIEEIVR----RLDPSKYPVPE---------------------------------- 297

  Fly   302 CDESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLNLNWRQPN---LVKFI 362
              ..|.||           .|:..|.|:          :.:|:::   .|.|.:||   ||||:
  Rat   298 --NWLHKE-----------ARQLFLEPE----------VLDPESV---ELKWSEPNEEELVKFM 335

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 2..207 CDD:350217 60/229 (26%)
H3TH_GEN1 210..342 CDD:188625 24/131 (18%)
Chromo_2 400..473 CDD:465841
Fen1XP_006231134.1 PTZ00217 26..384 CDD:240317 93/389 (24%)
Blue background indicates that the domain is not in the aligned region.

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