DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gen and UVH3

DIOPT Version :9

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001325748.1 Gene:UVH3 / 822427 AraportID:AT3G28030 Length:1508 Species:Arabidopsis thaliana


Alignment Length:672 Identity:141/672 - (20%)
Similarity:250/672 - (37%) Gaps:211/672 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 SKGDKGR-------SRFNHVLKQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDC 167
            |.||:.|       |..:.:..:|:.||...||..:..|.||||.|||:.:..||||:::.|||.
plant   932 SLGDEQRKLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDV 996

  Fly   168 FAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGI 232
            |.:||..||:|.....:        .|:.|.|::|...:...:.|||.||:|.|.|| .:||.||
plant   997 FLFGARSVYKNIFDDRK--------YVETYFMKDIEKELGLSRDKIIRMAMLLGSDY-TEGISGI 1052

  Fly   233 GKDGVLKLFNKYKETEILDRMRSW--------RGETDKYNALEIR------VDDKSICSNCGHIG 283
            |....:::...:.|.:.|.:.|.|        .|:||.....:::      ||:|.|.       
plant  1053 GIVNAIEVVTAFPEEDGLQKFREWVESPDPTILGKTDAKTGSKVKKRGSASVDNKGII------- 1110

  Fly   284 KTQSHTKSGCSVCRTHKGCDESLWKEQRLSIKSE----LTLRRKALLSPDFPNEEIIAEFLSEPD 344
                   ||.|...|.:  .:.::.:|...:...    ||          ||:|.:|:.:|:...
plant  1111 -------SGASTDDTEE--IKQIFMDQHRKVSKNWHIPLT----------FPSEAVISAYLNPQV 1156

  Fly   345 TIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCFQKF-----------FPILTRWQVQQSKQEKIL 398
            .:.....:|.:|:|....|           .|::||           .|:|..:   :.::.::.
plant  1157 DLSTEKFSWGKPDLSVLRK-----------LCWEKFNWNGKKTDELLLPVLKEY---EKRETQLR 1207

  Fly   399 IQPH--------EIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEYEAEHPKGIEELYYTIE 455
            |:..        :|..||..|.|          .||..||..|      .|:|         |::
plant  1208 IEAFYSFNERFAKIRSKRINKAV----------KGIGGGLSSD------VADH---------TLQ 1247

  Fly   456 PLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPNSKPKRVV-RKIKAQPEE-NQ 518
                                |.|.|   |.||..:..|.::|..:.|...:. .|:|.:.:. .:
plant  1248 --------------------EGPRK---RNKKKVAPHETEDNNTSDKDSPIANEKVKNKRKRLEK 1289

  Fly   519 PLLHQFLGRKKEGTPVKAPAPQRQQCSTPITKFLPSDLE-SDCDAEEFDMSDIVKGIISNPNAKP 582
            |...:..||          |.:|.:....:.|.|   || ||..:::.|..|.|..:    .|||
plant  1290 PSSSRGRGR----------AQKRGRGRGRVQKDL---LELSDGSSDDDDDDDKVVEL----EAKP 1337

  Fly   583 ALTNHDGHQLHYEPMAEDLSLRLAQMSLGNVNESPKVETKRDLSQVDQLPQSKRFSLEDSFDLLV 647
            |                    .|.::.....:.:|.:.:.::..::|: .:|...|..::|:.:.
plant  1338 A--------------------NLQKVRKSTRSRNPVMYSAKEDDELDE-SRSNEGSPSENFEEVD 1381

  Fly   648 KGDLQKLARTPVERFKMQHRISEKIPTPVKPLDNISYFFNQSSDNADVFEELMNSSLVPQ----- 707
            :|.:..               .:.:...:....:..|........||..:|:.::.|..:     
plant  1382 EGRIGN---------------DDSVDASINDCPSEDYIQTGGGFCADEADEIGDAHLEDKATDDY 1431

  Fly   708 ---------DQEDNAEDEEEDD 720
                     |:::.||:...||
plant  1432 RVIGGGFCVDEDETAEENTMDD 1453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 1..385 CDD:189039 80/310 (26%)
H3TH_GEN1 210..342 CDD:188625 37/149 (25%)
UVH3NP_001325748.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0258
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1094524at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11081
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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