DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gen and fen1

DIOPT Version :10

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001017005.1 Gene:fen1 / 549759 XenbaseID:XB-GENE-955518 Length:382 Species:Xenopus tropicalis


Alignment Length:354 Identity:82/354 - (23%)
Similarity:145/354 - (40%) Gaps:66/354 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 GKKVAIDLAGWVCESLNVVDYFVHPRH--------------HLKNLFFRTCYLIWEQVTPVFVLE 74
            |:|||:|      .|:.:..:.:..|.              ||..:|:||..:|...:.||:|.:
 Frog    28 GRKVAVD------ASMCIYQFLIAVRQDGNMLQNEDGETTSHLMGMFYRTIRMIEHGIKPVYVFD 86

  Fly    75 GVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDKGRSRFNHVLKQ----CETLLLSMGI 135
            |..|::||..:|||:|.:....|...:.| ...:....:|...|...|.||    |:.||..||:
 Frog    87 GKPPQMKSGELAKRSERRAEAEKLLEAAE-EAGEVENIEKFNKRLVKVTKQHNEECKKLLTLMGV 150

  Fly   136 QCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMR 200
            ..|..|.||||.||.|.|.|.|....::|.|...:|...:.|:.:     |..|....:..:.:.
 Frog   151 PYVDAPCEAEATCAALVKAGKVYAAATEDMDALTFGTPVLLRHLT-----ASEAKKLPIQEFHLN 210

  Fly   201 EITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKE-TEILDRM--------RSW 256
            .:...|....::.:.:.:|.|.||| :.|.|||....:.|..::|. .||:|.:        .:|
 Frog   211 RVMQDMGVSHEQFVDLCILLGSDYC-ETIRGIGPKRAIDLIRQHKSIEEIVDNIDLKKYPIPENW 274

  Fly   257 RGETDKYNALEIRVDDKS--------------ICSNCGHIGKTQSHTKSGC-SVCRTHKGCDE-- 304
            ..:..:...||..|.|..              :...|.....::...::|. .:.:..:|..:  
 Frog   275 LHKEARQLFLEPEVVDTESTELKWIEPDEEGLVAFMCAEKQFSEDRIRNGAKKLSKNRQGSTQGR 339

  Fly   305 ---------SLWKEQRLSIKSELTLRRKA 324
                     |:...:|..::|:.:.::||
 Frog   340 LDDFFKVTGSISSTKRKEVESKGSAKKKA 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 2..207 CDD:350217 54/200 (27%)
H3TH_GEN1 210..342 CDD:188625 27/150 (18%)
Chromo_2 400..473 CDD:465841
fen1NP_001017005.1 PTZ00217 1..359 CDD:240317 79/343 (23%)
N-domain 1..104 24/81 (30%)
I-domain 122..253 39/136 (29%)
Interaction with PCNA. /evidence=ECO:0000255|HAMAP-Rule:MF_03140 336..344 0/7 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 352..382 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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