DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gen and Fen1

DIOPT Version :9

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_523765.1 Gene:Fen1 / 36887 FlyBaseID:FBgn0025832 Length:385 Species:Drosophila melanogaster


Alignment Length:527 Identity:111/527 - (21%)
Similarity:192/527 - (36%) Gaps:174/527 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVKELWGVLTPHCERKPINELR---GKKVAIDLAGWVC----------ESLNVVDYFVHPRHHL 52
            :|:.:|...|.|...|:  :|::   |:|||||.:  :|          |...:......|..||
  Fly     4 LGLSKLIADLAPQAIRE--SEMKHFFGRKVAIDAS--MCLYQFLIAVRSEGAQLATVNGDPTSHL 64

  Fly    53 KNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKG-DKGR 116
            ..:|:||..|:...:.||:|.:|..|.|||..:|||.|      :.:.:.:..::....| |.|.
  Fly    65 MGMFYRTIRLLDNGIKPVYVFDGKPPDLKSGELAKRAE------RREEAEKALKAATDAGDDAGI 123

  Fly   117 SRFNHVL--------KQCETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAV 173
            .:||..|        |:.:.||..||:..|..|.||||.||.|.|.|.|....::|.|...:|:.
  Fly   124 EKFNRRLVRVTKEHAKEAKELLTLMGVPYVDAPCEAEAQCAALVKAGKVYATATEDMDALTFGST 188

  Fly   174 RVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVL 238
            ::.|..:.|     .|....|..:...::...:....::.|.:.:|.||||| :.|.|||....:
  Fly   189 KLLRYLTYS-----EARKMPVKEFSYDKLLEGLAINNREFIDLCILLGCDYC-ESIKGIGPKRAI 247

  Fly   239 KLFNKYKETE-ILDRMRSWRGETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHKGC 302
            :|.|.|::.| |||.:     ::.||..                                     
  Fly   248 ELINTYRDIETILDNL-----DSSKYTV------------------------------------- 270

  Fly   303 DESLWKEQRLSIKSELTLRRKALLSPDFPNEEIIAEFLSEPDT--IPNLNLNWRQPN---LVKFI 362
                                     |:..|.::..|...||:.  ..:::|.|.:|:   ||||:
  Fly   271 -------------------------PENWNYKVARELFIEPEVADADSIDLKWVEPDEEGLVKFL 310

  Fly   363 KQIGHLLQWPEIYCFQKFFPILTRWQVQQSKQEKILIQPHEIIKKRTVKGVPSLELRWHDPSGIF 427
                         |..:           |..:|::.....:::|.:                   
  Fly   311 -------------CGDR-----------QFNEERVRNGAKKLMKSK------------------- 332

  Fly   428 KGLIPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEE 492
                        :|:....::..:.|:       .:.|:...| .|.|.:.|||:...||..:..
  Fly   333 ------------QAQTQVRLDSFFKTL-------PSTPNATNA-AKRKAEEAKKSANNKKAKTSG 377

  Fly   493 ENKENEP 499
            ..:...|
  Fly   378 GGRGRRP 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 1..385 CDD:189039 96/411 (23%)
H3TH_GEN1 210..342 CDD:188625 23/132 (17%)
Fen1NP_523765.1 PTZ00217 1..363 CDD:240317 105/504 (21%)
PIN_FEN1 5..344 CDD:189037 100/476 (21%)
H3TH_FEN1-Euk 222..290 CDD:188627 25/135 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440837
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0258
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1094524at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11081
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
54.850

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