DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gen and exo-1

DIOPT Version :9

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_499770.1 Gene:exo-1 / 176765 WormBaseID:WBGene00009731 Length:639 Species:Caenorhabditis elegans


Alignment Length:656 Identity:140/656 - (21%)
Similarity:232/656 - (35%) Gaps:188/656 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVC-----------------ESLNVVDYFVHP 48
            ||:..|...:...|.:..|.|||||.||||::   |                 |:.:.|:|.   
 Worm     1 MGISGLLPFVKNACRKGNILELRGKSVAIDVS---CLLHRGLTGCMDKIHMGEETQSYVNYV--- 59

  Fly    49 RHHLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGD 113
            ..::|.|....|::       |.|.:|.....|.....:|.||:      :...|..:...:||.
 Worm    60 NKYVKELLGMGCHV-------VMVFDGRPLPAKKGTNEERRELR------EKRKEHAEMLLAKGL 111

  Fly   114 KGRSRFNH---------VLKQCETLLLSM-GIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCF 168
            :..:|..:         :::.......|| .:..|..|.||:|..|:|.:..|||.||::|||..
 Worm   112 EREARDTYRLATSISADIVENTIQYFRSMTNVDIVVAPYEADAQLAYLVQEKLVDAVITEDSDLI 176

  Fly   169 AYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITS---------RMDFGQQKIIVMALLCGCDY 224
            .:|...:|..:..:|        |...:|:...:.:         :.||  .|...:.:|.||||
 Worm   177 VFGCEMIYFKWQSAT--------GECSVYEKCNLKNCFTGELGGDKFDF--VKFRRICILSGCDY 231

  Fly   225 CPDGIGGIGKDGVLKLF----------------------------------------NKYKETEI 249
            ...|:.|:|.....|.|                                        |.:|...:
 Worm   232 LQAGLPGVGLSTAAKFFSMTSIKDLRTLLRKVPSYLKNPKLKEHVNDEFIRNFEKAENTFKHQIV 296

  Fly   250 LDRMRSWRGETDKY--NALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHKGCDESLWKEQRL 312
            .|.....:.....|  ..|...|||.....:.....||...:||     ..:.|...:    ||:
 Worm   297 FDPRERCQKPLTPYPKEVLMTGVDDLEEVIDLDSPKKTAPSSKS-----FAYAGTAST----QRI 352

  Fly   313 SIKSELTLRRKALLSPDFPNEEIIAE--FLSEPD---TIPNLNLNWRQPNLVKFIKQIGHLLQWP 372
            :|       |.||.:|:  |:..|.:  .|.:|.   ::..|....:...|.|..||    .:..
 Worm   353 AI-------RLALGNPE--NKSSIDDQFLLVQPTPEWSVWGLRYESKGSTLDKISKQ----KELE 404

  Fly   373 EIYC---FQKFFPILTRWQV-----QQSKQEKILIQ-------PHEIIKKRTVKGVPSLELRWHD 422
            ...|   |:...|.:.|.:|     ....::.|:.|       ..:.||||  |..|.::..   
 Worm   405 ATQCGGAFKLDSPSVKRVKVASKTTPNDDEDDIVKQFMADIEKEKKAIKKR--KNAPQVDYN--- 464

  Fly   423 PSGIFKGLIPDKQIAEYEAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKK 487
                     .|..:.:| ||.|.  |:....:|.:|       |..:.|.:.|   .|:.|  |:
 Worm   465 ---------ADVLLKKY-AEPPP--EKRQKILEVID-------DDFSEFFQEK---VKENT--KE 505

  Fly   488 TASEEENKENEPNSKPKRVVRKIKAQPEE-------NQPLL-HQFLGRKKEGTPVKAPAPQRQQC 544
            :.:||:.:.:....||..::||..:.|:.       ..||| ||  .......|.:.||...:..
 Worm   506 SVAEEKVENSNEELKPPPILRKAVSTPDSARKTHKFQSPLLNHQ--NSAPPSLPDRKPAQTSKYF 568

  Fly   545 STPITK 550
            |.|.::
 Worm   569 SKPTSE 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 1..385 CDD:189039 99/469 (21%)
H3TH_GEN1 210..342 CDD:188625 34/175 (19%)
exo-1NP_499770.1 PIN_EXO1 1..205 CDD:189027 54/230 (23%)
H3TH_EXO1 219..298 CDD:188628 13/78 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0258
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1094524at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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