DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gen and crn-1

DIOPT Version :9

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_491168.1 Gene:crn-1 / 171917 WormBaseID:WBGene00000794 Length:382 Species:Caenorhabditis elegans


Alignment Length:291 Identity:81/291 - (27%)
Similarity:129/291 - (44%) Gaps:51/291 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVKELWGVLTPHCERK-PINELR---GKKVAIDLAGWVCESLNVVDYFVHPRH----------- 50
            ||:|.|..|:..:.... .:||::   |:.||||      .|:.:..:.:..|.           
 Worm     1 MGIKGLSQVIADNAPSAIKVNEMKAFFGRTVAID------ASMCLYQFLIAVRQDGSQLQSEDGE 59

  Fly    51 ---HLKNLFFRTCYLIWEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKG 112
               ||..:..||..:....|.||:|.:|..|.:|...:.||:|.:....|     ..|::: .||
 Worm    60 TTSHLMGMLNRTVRMFENGVKPVYVFDGKPPDMKGGELEKRSERRAEAEK-----ALTEAK-EKG 118

  Fly   113 D-----KGRSRFNHVLKQ----CETLLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCF 168
            |     |...|...|.||    .:.||..|||..|:.|.||||.||.|.|.|.|.|.:::|.|..
 Worm   119 DVKEAEKFERRLVKVTKQQNDEAKRLLGLMGIPVVEAPCEAEAQCAHLVKAGKVFGTVTEDMDAL 183

  Fly   169 AYGAVRVYRNFSVSTQGAQAAAGGAVDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIG 233
            .:|:..:.|:|.     |..|....:..:::......|....::.|.:.:|.||||| ..|.|:|
 Worm   184 TFGSTVLLRHFL-----APVAKKIPIKEFNLSLALEEMKLSVEEFIDLCILLGCDYC-GTIRGVG 242

  Fly   234 KDGVLKLFNKYKETE-ILDRMRSWRGETDKY 263
            ....::|..::|..| ||:.:     :.:||
 Worm   243 PKKAVELIRQHKNIETILENI-----DQNKY 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 1..385 CDD:189039 81/291 (28%)
H3TH_GEN1 210..342 CDD:188625 17/55 (31%)
crn-1NP_491168.1 PIN_FEN1 4..344 CDD:189037 79/288 (27%)
fen_arch 22..344 CDD:274717 75/270 (28%)
H3TH_FEN1-Euk 221..290 CDD:188627 17/54 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0258
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1094524at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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