DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gen and gen1

DIOPT Version :9

Sequence 1:NP_647943.2 Gene:Gen / 38594 FlyBaseID:FBgn0263831 Length:726 Species:Drosophila melanogaster
Sequence 2:NP_001361766.1 Gene:gen1 / 100145302 XenbaseID:XB-GENE-940145 Length:927 Species:Xenopus tropicalis


Alignment Length:820 Identity:236/820 - (28%)
Similarity:357/820 - (43%) Gaps:180/820 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGVKELWGVLTPHCERKPINELRGKKVAIDLAGWVCESLNVVDYF--VHPRHHLKNLFFRTCYLI 63
            |||.:||.:|.|..:..|:..|.||.:|:||:.||||:..|....  || :.||:|||||...|.
 Frog     1 MGVTDLWSILGPVKKHVPLESLAGKTLAVDLSIWVCEAQMVKQMIGVVH-KPHLRNLFFRISSLN 64

  Fly    64 WEQVTPVFVLEGVAPKLKSQVIAKRNELQFRGVKPKNSPECTQSQPSKGDKGRSRFNHVLKQCET 128
            ...|..|||.||.|||:|::.::||||:::       .|..:.:.|.   .|||.|..|||:|..
 Frog    65 LLGVKLVFVSEGEAPKIKAETMSKRNEMRY-------GPSASAAPPK---AGRSYFKSVLKECLL 119

  Fly   129 LLLSMGIQCVQGPGEAEAYCAFLNKHGLVDGVISQDSDCFAYGAVRVYRNFSVSTQGAQAAAGGA 193
            :|..:||..||..|||||.||:||.||.|||.|:.|.|.|.|||..|||||:::.:...      
 Frog   120 MLECLGIPWVQAAGEAEAMCAYLNAHGYVDGCITNDGDVFLYGAQTVYRNFTMNVKDPH------ 178

  Fly   194 VDIYDMREITSRMDFGQQKIIVMALLCGCDYCPDGIGGIGKDGVLKLFNKYKETEILDRMRSWRG 258
            ||.|::.:|.:::...:::::.:|:|.||||.|.|:.|:.|...|||........:|.|...|..
 Frog   179 VDCYEVSKIKAQLGLDREELVGLAILLGCDYLPKGVPGVRKVQALKLIEMLNGESLLQRFYQWEK 243

  Fly   259 ETDKYNALEIRVDDKSICSNCGHIGKTQSHTKSGCSVCRTHKGCDESLW---------KEQRLSI 314
            :.::......:  .|..||.|.|.|..:.|.::||.:|.:.:.|:...:         ||||...
 Frog   244 DCNERGTKAPK--KKPHCSVCCHPGSAKDHERNGCKMCGSDRFCEPHDYDYRCPCDWHKEQREKQ 306

  Fly   315 KS--ELTLRRKALLSPDFPNEEIIAEFLSEPDTIPNLNLNWRQPNLVKFIKQIGHLLQWPEIYCF 377
            ::  |..::||:|....||..::|.|||...:.:..: |.|.:|:|..|.......:.||..|..
 Frog   307 ENSVEFNIKRKSLRCEGFPYRQVIDEFLINKNKLVKV-LKWGRPSLQCFQNFTAERMDWPRHYSC 370

  Fly   378 QKFFPILTRWQVQQSK---QEKILIQPHEIIKKRTVKGVPSLELRWHDPSGIFKGLIPDKQIAEY 439
            :|...:||.:.:.:.|   :....:|...|:|.|...|.|..|:.|         :.||..:  :
 Frog   371 EKLLVLLTYYDMNERKAGRENGTQLQAVRIVKTRIRNGSPCFEIEW---------VKPDSYV--F 424

  Fly   440 EAEHPKGIEELYYTIEPLDMLETAYPDLVAAFLKSKEKPAKKTTRKKKTASEEENKENEPNSKPK 504
            ..:||  .|....|||...:...|||.:|..|.|.|::             .||||.....||||
 Frog   425 ADDHP--AESPLVTIEEESLFRAAYPHVVTMFHKEKQE-------------AEENKLKCKKSKPK 474

  Fly   505 -----------RVVRKIKAQP--EENQPLLHQFLGRKKEGTPVKAPAPQRQQCSTPITKFLPSDL 556
                       .::.::..:|  |:..||..|..|...:....|   |.|.      :.||  .|
 Frog   475 SKAADDLDDVASLLSELSLKPVSEKQPPLELQEDGGDSDSVHEK---PARD------SNFL--SL 528

  Fly   557 ESDCDA-------------EEFDMSDIVKGIISNP-NAKPALTNHDGHQLHYEPMAEDLSLRLAQ 607
            .||.|:             .||..|.......||| .:.||.:|..    |....:.::|..:::
 Frog   529 SSDADSGVERGILLDTKTDSEFFTSPTADNEPSNPLCSSPAPSNTQ----HLTAASPNISAVISE 589

  Fly   608 MSLGNV-------NESPKVE-------------------TKRDL-------------------SQ 627
            :.|.::       ::||:.|                   |..:|                   |.
 Frog   590 LQLSSIDWDSTSFSKSPQAEERTKGSKEVGERGEFCYKPTTNNLETSGNKSKEVQNGIARPGTSN 654

  Fly   628 VDQLPQSKRFSLEDSFDL------LVKGDLQKLARTPVERFKMQHRISEKIPTPVKP----LDNI 682
            ...|..||:.::||...|      |:|..:|.....|   .|||.:     |.||||    |.| 
 Frog   655 KVHLTNSKQSNVEDFHKLPLKERVLLKNAVQSGVPYP---GKMQTK-----PVPVKPVPLSLHN- 710

  Fly   683 SYFFNQSSDNA-------DVFEEL-----MNSSLVPQDQE 710
            ....|.||.|:       |:.|::     |..|..|..||
 Frog   711 QGLGNHSSKNSVPTTLGIDIKEKVHQKLPMKLSRDPSQQE 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GenNP_647943.2 PIN_GEN1 1..385 CDD:189039 138/396 (35%)
H3TH_GEN1 210..342 CDD:188625 41/142 (29%)
gen1NP_001361766.1 PIN_GEN1 2..206 CDD:350217 89/220 (40%)
H3TH_StructSpec-5'-nucleases 195..336 CDD:389913 41/142 (29%)
Chromo_2 396..456 CDD:376128 21/72 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 83 1.000 Domainoid score I8233
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 264 1.000 Inparanoid score I2994
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1094524at2759
OrthoFinder 1 1.000 - - FOG0005192
OrthoInspector 1 1.000 - - otm48608
Panther 1 1.100 - - LDO PTHR11081
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4810
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
99.070

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