DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srp54k and SRP54

DIOPT Version :9

Sequence 1:NP_523931.1 Gene:Srp54k / 38593 FlyBaseID:FBgn0010747 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_015413.1 Gene:SRP54 / 856203 SGDID:S000006292 Length:541 Species:Saccharomyces cerevisiae


Alignment Length:527 Identity:243/527 - (46%)
Similarity:342/527 - (64%) Gaps:43/527 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLADLGRKITTALHSLSKATVINEE-----ALNSMLKEICAALLEADVNIRLVKQLRENVRAVI 60
            |||||||::|.:|:::    .:.|.:     :::.|||.|..||||:||||.||.:||.|:|:.:
Yeast     1 MVLADLGKRINSAVNN----AISNTQDDFTTSVDVMLKGIVTALLESDVNIALVSKLRNNIRSQL 61

  Fly    61 ----DFDEMAGGLNKRRMIQSAVFKELVKLV---DPGVKPYQPIKGKANVVMFVGLQGSGKTTTC 118
                ..::.......:::||..||.||.|||   ....|.:.|.|.|.|::||||||||||||:|
Yeast    62 LSENRSEKSTTNAQTKKLIQKTVFDELCKLVTCEGSEEKAFVPKKRKTNIIMFVGLQGSGKTTSC 126

  Fly   119 TKLAYHYQKRNWKSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREG 183
            ||||.:|.||.:|..|||||||||||:||:||||.:|||||||||||.||..:|::|::.||:|.
Yeast   127 TKLAVYYSKRGFKVGLVCADTFRAGAFDQLKQNAIRARIPFYGSYTETDPAKVAEEGINKFKKEK 191

  Fly   184 FEMIIVDTSGRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIIT 248
            |::|||||||||.|||.||:||:.:||.:.|:..|.|:||:||||.|.|:||||:..|.|::|:|
Yeast   192 FDIIIVDTSGRHHQEEELFQEMIEISNVIKPNQTIMVLDASIGQAAEQQSKAFKESSDFGAIILT 256

  Fly   249 KLDGHAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLD 313
            |:||||:||||:||||||.:|||||||||||.|||.|..|.|:|||||:||||.|.:   :|:..
Yeast   257 KMDGHARGGGAISAVAATNTPIIFIGTGEHIHDLEKFSPKSFISKLLGIGDIESLFE---QLQTV 318

  Fly   314 GNDE----LLEKIKHGHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKR 374
            .|.|    .:|.|:.|.||:.|..:|.|.||||||.|....||||.| :.|.:.||:|:..::|:
Yeast   319 SNKEDAKATMENIQKGKFTLLDFKKQMQTIMKMGPLSNIAQMIPGMS-NMMNQVGEEETSQKMKK 382

  Fly   375 MMTMMDSMSDNELDNRDGAKLFSKQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVK------- 432
            |:.::|||:..||:: || ::|.::|.|.||||:|:|....||:.::......:.:.:       
Yeast   383 MVYVLDSMTKEELES-DG-RMFIEEPTRMVRVAKGSGTSVFEVEMILMQQQMMARMAQTATQQQP 445

  Fly   433 -------KMGGVKGLFKQGDMTKNVNPTQMAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQG 490
                   :|.|:..:....:|....|...|.|:..|:.:....::.|   ..|.:||||.....|
Yeast   446 GAPGANARMPGMPNMPGMPNMPGMPNMPGMPKVTPQMMQQAQQKLKQ---NPGLMQNMMNMFGGG 507

  Fly   491 AAGGLGG 497
            ..||:||
Yeast   508 MGGGMGG 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp54kNP_523931.1 SRP54_euk 2..428 CDD:273615 224/441 (51%)
SRP54_N 6..83 CDD:280954 27/85 (32%)
SRP54 102..294 CDD:278855 128/191 (67%)
SRP_SPB 327..428 CDD:281039 41/100 (41%)
SRP54NP_015413.1 SRP54_euk 2..436 CDD:273615 224/443 (51%)
Cytadhesin_P30 <431..>484 CDD:284643 7/52 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342214
Domainoid 1 1.000 284 1.000 Domainoid score I251
eggNOG 1 0.900 - - E1_COG0541
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2362
Inparanoid 1 1.050 432 1.000 Inparanoid score I274
Isobase 1 0.950 - 0 Normalized mean entropy S946
OMA 1 1.010 - - QHG62209
OrthoFinder 1 1.000 - - FOG0002467
OrthoInspector 1 1.000 - - oto99153
orthoMCL 1 0.900 - - OOG6_100507
Panther 1 1.100 - - LDO PTHR11564
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1391
SonicParanoid 1 1.000 - - X1645
TreeFam 1 0.960 - -
1615.740

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