DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srp54k and ATHSRP54A

DIOPT Version :9

Sequence 1:NP_523931.1 Gene:Srp54k / 38593 FlyBaseID:FBgn0010747 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_563970.1 Gene:ATHSRP54A / 838100 AraportID:AT1G15310 Length:479 Species:Arabidopsis thaliana


Alignment Length:509 Identity:268/509 - (52%)
Similarity:374/509 - (73%) Gaps:31/509 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEM 65
            ||||:||.:||.|:..::..|:|:|:.||..|.||..|||::||:..||::::.|::.:::.|::
plant     1 MVLAELGGRITRAIQQMNNVTIIDEKVLNDFLNEITRALLQSDVSFGLVEKMQTNIKKIVNLDDL 65

  Fly    66 AGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNW 130
            |.|.|||.:|:.|:||||.:::|||...:.|.|.|.:|||||||||:||||||||.||::||:.:
plant    66 AAGHNKRLIIEQAIFKELCRMLDPGKPAFAPKKAKPSVVMFVGLQGAGKTTTCTKYAYYHQKKGY 130

  Fly   131 KSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRH 195
            |:.|||||||||||:||:|||||||:|||||||||.|||.||.:|||.||:|..::|||||||||
plant   131 KAALVCADTFRAGAFDQLKQNATKAKIPFYGSYTESDPVKIAVEGVDRFKKEKCDLIIVDTSGRH 195

  Fly   196 KQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGAL 260
            ||..||||||..|:.|..||.:|||||::||||...||:|||:.|.:|:|||||:||||||||||
plant   196 KQAASLFEEMRQVAEATEPDLVIFVMDSSIGQAAFEQAEAFKETVSVGAVIITKMDGHAKGGGAL 260

  Fly   261 SAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNE-LKLDGNDELLEKIKH 324
            ||||||:||:||||||||:|:.|.|..|||||:|||.||..||:||:.| :..|..:||:|.:..
plant   261 SAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGKGDWSGLVDKLQEVVPKDLQNELVENLSQ 325

  Fly   325 GHFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDN 389
            |:||:|.||:|||..::: |.:|..:|:||.|.:.|.||..:||..::||.|||||||::.|||:
plant   326 GNFTLRSMYDQFQCSLRI-PLNQLFSMLPGISAEMMPKGHGEESRVKMKRYMTMMDSMTNKELDS 389

  Fly   390 RDGAKLFSKQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNVNPTQ 454
             ...|:|::  :|.:|:|:|:|.:.|||.|::..|.:   :.|.|.|:| :.|.|||        
plant   390 -PNPKIFNE--SRIMRIARGSGRLVREVMEMLEEYKR---IAKTMKGIK-IPKNGDM-------- 439

  Fly   455 MAKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGNLMSGFGGK 508
                    :|:|.|:||:||||:.|:|::|:|:  |:|..:.|    |.|.|||
plant   440 --------SKVIPPQMLKQMGGMSGLQSLMKQM--GSAKDMMG----MFGGGGK 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp54kNP_523931.1 SRP54_euk 2..428 CDD:273615 238/426 (56%)
SRP54_N 6..83 CDD:280954 31/76 (41%)
SRP54 102..294 CDD:278855 138/191 (72%)
SRP_SPB 327..428 CDD:281039 43/100 (43%)
ATHSRP54ANP_563970.1 SRP54_euk 2..426 CDD:273615 238/430 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 292 1.000 Domainoid score I358
eggNOG 1 0.900 - - E1_COG0541
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 547 1.000 Inparanoid score I257
OMA 1 1.010 - - QHG62209
OrthoDB 1 1.010 - - D463152at2759
OrthoFinder 1 1.000 - - FOG0002467
OrthoInspector 1 1.000 - - otm3147
orthoMCL 1 0.900 - - OOG6_100507
Panther 1 1.100 - - O PTHR11564
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1645
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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