DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srp54k and Srp54b

DIOPT Version :9

Sequence 1:NP_523931.1 Gene:Srp54k / 38593 FlyBaseID:FBgn0010747 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001093579.1 Gene:Srp54b / 665155 MGIID:3714357 Length:504 Species:Mus musculus


Alignment Length:505 Identity:388/505 - (76%)
Similarity:453/505 - (89%) Gaps:4/505 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEM 65
            |||||||||||:||.|||.||:||||.||:||||:|.|||||||||:|||||||||::.||.:||
Mouse     1 MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEM 65

  Fly    66 AGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNW 130
            |.|||||:|||.|||||||||||||||.:.|.|||.||:||||||||||||||:||||:||::.|
Mouse    66 ASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGW 130

  Fly   131 KSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRH 195
            |:||:|||||||||:||:|||||||||||||||||:|||:||.:||:.||.|.||:|||||||||
Mouse   131 KTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRH 195

  Fly   196 KQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGAL 260
            |||:|||||||.||||:.||||::||||:|||||||||||||||||:.|||:|||||||||||||
Mouse   196 KQEDSLFEEMLQVSNAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGAL 260

  Fly   261 SAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIKHG 325
            ||||||:||||||||||||||.|||||:||:||||||||||||||||||||||.|:.|:||:|||
Mouse   261 SAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHG 325

  Fly   326 HFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNR 390
            .||:||||||||||||||||||.:.|||||..|||:||.|||||||:|::||:||||:|.|||:.
Mouse   326 QFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDST 390

  Fly   391 DGAKLFSKQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLFKQGDMTKNVNPTQM 455
            ||||:|||||.|..|||:|:||..|:|:||:..||||:.:||||||:|||||.|||:|||:.:||
Mouse   391 DGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQM 455

  Fly   456 AKLNQQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAAGGLGGLGNLMSGF 505
            ||||||:|||:|||:|..|||:.|:|:||||.||||||.:.|    |.||
Mouse   456 AKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKG----MMGF 501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp54kNP_523931.1 SRP54_euk 2..428 CDD:273615 335/425 (79%)
SRP54_N 6..83 CDD:280954 59/76 (78%)
SRP54 102..294 CDD:278855 158/191 (83%)
SRP_SPB 327..428 CDD:281039 71/100 (71%)
Srp54bNP_001093579.1 G-domain 1..295 238/293 (81%)
SRP54_euk 2..430 CDD:273615 336/427 (79%)
M-domain 296..504 148/210 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167833888
Domainoid 1 1.000 348 1.000 Domainoid score I1030
eggNOG 1 0.900 - - E1_COG0541
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2362
Inparanoid 1 1.050 800 1.000 Inparanoid score I500
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62209
OrthoDB 1 1.010 - - D224280at33208
OrthoFinder 1 1.000 - - FOG0002467
OrthoInspector 1 1.000 - - otm42654
orthoMCL 1 0.900 - - OOG6_100507
Panther 1 1.100 - - LDO PTHR11564
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1391
SonicParanoid 1 1.000 - - X1645
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.800

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