Protein Alignment Srp54k and SrpRalpha

DIOPT Version :9

• Sequence 1: NP_523931.1
• Gene: Srp54k / 38593
• FlyBaseID: FBgn0010747
• Length: 508
• Species: Drosophila melanogaster
• Sequence 2: NP_524887.2
• Gene: SrpRalpha / 47251
• FlyBaseID: FBgn0010391
• Length: 614
• Species: Drosophila melanogaster
• Alignment Length: 309
• Identity: 72/309 - (23%)
• Similarity: 134/309 - (43%)
• Gaps: 51/309 - (16%)

  Fly    28 LNSMLKEICAALLEADVNIRLVKQLRENVRAVID------FDEMAGGLNKRRMIQSAVFKELVKL 86
            |...|:::...|:..:|...:..:|.::|.|.:|      ||.:|.      .::.|:.:.||::
  Fly   315 LQPALEKMRDHLISKNVASEIAAKLCDSVAASLDGKQMGTFDSIAS------QVKEALTESLVRI 373

  Fly    87 VDPG-----VKPYQPIK--GKANVVMFVGLQGSGKTTTCTKLAYHYQKRNWKSCLVCADTFRAGA 144
            :.|.     ::.....|  |:...::|.|:.|.||:|...|:.:...:.::...:...|||||||
  Fly   374 LSPKRRIDIIRDALESKRNGRPYTIIFCGVNGVGKSTNLAKICFWLIENDFNVLIAACDTFRAGA 438

  Fly   145 YDQVK-----------------QNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTS 192
            .:|::                 :|..:.....||.    |...||.:.:........::::|||:
  Fly   439 VEQLRTHTRHLNALHPAAKHDGRNMVQLYEKGYGK----DAAGIAMEAIKFAHDTRVDVVLVDTA 499

  Fly   193 GRHKQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVD----------IGSVII 247
            ||.:..|.|...:..:....:||.::||.:|.:|.....|...|...:.          |..:::
  Fly   500 GRMQDNEPLMRSLSKLIKVNNPDLVLFVGEALVGNEAVDQLVKFNQSLADYSSNENPHIIDGIVL 564

  Fly   248 TKLDG-HAKGGGALSAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLL 295
            ||.|. ..|.|.|:|....|..||:|:|||:...||:.......|:.|:
  Fly   565 TKFDTIDDKVGAAISMTYITGQPIVFVGTGQTYADLKAINVNAVVNSLM 613

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Srp54k	NP_523931.1	SRP54_euk	2..428	CDD:273615	72/309 (23%)
		SRP54_N	6..83	CDD:280954	12/60 (20%)
		SRP54	102..294	CDD:278855	54/219 (25%)
		SRP_SPB	327..428	CDD:281039
SrpRalpha	NP_524887.2	SRP-alpha_N	27..268	CDD:282006
		PRK14974	258..613	CDD:237875	71/307 (23%)
		SRP54_N	299..374	CDD:214941	14/64 (22%)
		SRP	396..592	CDD:239389	48/199 (24%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45467900
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	2	1.840