DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Srp54k and srp54

DIOPT Version :9

Sequence 1:NP_523931.1 Gene:Srp54k / 38593 FlyBaseID:FBgn0010747 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_588209.1 Gene:srp54 / 2539290 PomBaseID:SPCC188.06c Length:522 Species:Schizosaccharomyces pombe


Alignment Length:511 Identity:269/511 - (52%)
Similarity:368/511 - (72%) Gaps:19/511 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLADLGRKITTALHSLSKATVINEEALNSMLKEICAALLEADVNIRLVKQLRENVRAVIDFDEM 65
            ||.|||||::.:||...||||.:|||.::::||.||.||||.|||:|||::||.|::..|:...:
pombe     1 MVFADLGRRLNSALGDFSKATSVNEELVDTLLKNICTALLETDVNVRLVQELRSNIKKKINVSTL 65

  Fly    66 AGGLNKRRMIQSAVFKELVKLVDPGVKPYQPIKGKANVVMFVGLQGSGKTTTCTKLAYHYQKRNW 130
            ..|:|.:|::|.|||.||..||||.|..:.|.||:.:|:|.||||||||||||:|||.|||:|..
pombe    66 PQGINGKRIVQKAVFDELCSLVDPKVDAFTPKKGRPSVIMMVGLQGSGKTTTCSKLALHYQRRGL 130

  Fly   131 KSCLVCADTFRAGAYDQVKQNATKARIPFYGSYTEIDPVVIAQDGVDMFKREGFEMIIVDTSGRH 195
            |||||.||||||||:||:||||.|||:|::|||||.||||||::|||.||.:.|::|||||||||
pombe   131 KSCLVAADTFRAGAFDQLKQNAIKARVPYFGSYTETDPVVIAKEGVDKFKNDRFDVIIVDTSGRH 195

  Fly   196 KQEESLFEEMLAVSNAVSPDNIIFVMDATIGQACEAQAKAFKDKVDIGSVIITKLDGHAKGGGAL 260
            :||:.||.||:.:|:|:.||..|.::||:||||.|:|:||||:..|.|:||||||||||||||||
pombe   196 QQEQELFAEMVEISDAIRPDQTIMILDASIGQAAESQSKAFKETADFGAVIITKLDGHAKGGGAL 260

  Fly   261 SAVAATQSPIIFIGTGEHIDDLEPFKTKPFVSKLLGMGDIEGLIDKVNELKLDGNDELLEKIKHG 325
            ||||||::||:||||||||:|||.|..:.|:|||||:||:|||::.|..|..| ...:::.::.|
pombe   261 SAVAATKTPIVFIGTGEHINDLERFSPRSFISKLLGLGDLEGLMEHVQSLDFD-KKNMVKNLEQG 324

  Fly   326 HFTIRDMYEQFQNIMKMGPFSQFMNMIPGFSQDFMTKGGEQESMARVKRMMTMMDSMSDNELDNR 390
            .||:||..:|..||||:||.|:..:||||.| :.|....::|...|:|||:.::|||::.|||: 
pombe   325 KFTVRDFRDQLGNIMKLGPLSKMASMIPGMS-NMMNGMNDEEGSLRMKRMLYIVDSMTEQELDS- 387

  Fly   391 DGAKLFSKQPNRCVRVAQGAGVMEREVKELIAHYTKFSAVVKKMGGVKGLF-KQGDMTKNVNPTQ 454
            ||. ||.:||:|.:|||:|:|....||:|.|:....|:.:.||:||..|:. |.|.     ||..
pombe   388 DGL-LFVEQPSRVLRVARGSGTSVLEVEETISQVRVFAQMAKKIGGKDGILGKLGG-----NPAA 446

  Fly   455 MAKLN-QQIAKMIDPRMLQQMGGVGGIQNMMRQLQQGAA--GGLGGLGNLMSGFGG 507
            ..|.: :|:|.|  .:.:|.||..||    |..|..|:.  |.:..:.|::.|.||
pombe   447 ALKKDPRQLAAM--QKRMQAMGMGGG----MPGLNPGSMNFGDISKMANMLMGGGG 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp54kNP_523931.1 SRP54_euk 2..428 CDD:273615 241/425 (57%)
SRP54_N 6..83 CDD:280954 37/76 (49%)
SRP54 102..294 CDD:278855 133/191 (70%)
SRP_SPB 327..428 CDD:281039 45/100 (45%)
srp54NP_588209.1 SRP54_euk 2..426 CDD:273615 242/427 (57%)
SRP54_N 6..83 CDD:280954 37/76 (49%)
SRP54 102..293 CDD:278855 132/190 (69%)
SRP_SPB 325..428 CDD:281039 46/105 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 291 1.000 Domainoid score I276
eggNOG 1 0.900 - - E1_COG0541
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2362
Inparanoid 1 1.050 507 1.000 Inparanoid score I236
OMA 1 1.010 - - QHG62209
OrthoFinder 1 1.000 - - FOG0002467
OrthoInspector 1 1.000 - - oto100685
orthoMCL 1 0.900 - - OOG6_100507
Panther 1 1.100 - - LDO PTHR11564
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1391
SonicParanoid 1 1.000 - - X1645
TreeFam 1 0.960 - -
1413.860

Return to query results.
Submit another query.