DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srp54k and rsp-7

DIOPT Version :9

Sequence 1:NP_523931.1 Gene:Srp54k / 38593 FlyBaseID:FBgn0010747 Length:508 Species:Drosophila melanogaster
Sequence 2:NP_001369854.1 Gene:rsp-7 / 174646 WormBaseID:WBGene00004704 Length:452 Species:Caenorhabditis elegans


Alignment Length:139 Identity:31/139 - (22%)
Similarity:46/139 - (33%) Gaps:57/139 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   306 KVNELK-----------LDGNDELLEKIKHGHFTIRDMY--EQFQNIMKMGP-----------FS 346
            ||.|::           :||| |:||        :.:||  |.....|..||           ||
 Worm   157 KVEEIRRTVYVGNLPKGVDGN-EVLE--------LFNMYFGEVMYARMASGPDALPCAYAYVEFS 212

  Fly   347 QFMNMIPGFSQDFMTKGGE--------QESMARVKRMMTMMDSMSDNEL----------DNRDGA 393
            |..::......|    |.|        |.|...:.:.....|..:..|:          |:||..
 Worm   213 QQASVCNALQND----GFEFKERPLKIQHSRVAIIKPQAKTDEQALGEIEEAIRMGRNGDDRDRR 273

  Fly   394 KLFSKQPNR 402
            :  |:.|.|
 Worm   274 R--SRSPRR 280

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp54kNP_523931.1 SRP54_euk 2..428 CDD:273615 31/139 (22%)
SRP54_N 6..83 CDD:280954
SRP54 102..294 CDD:278855
SRP_SPB 327..428 CDD:281039 22/107 (21%)
rsp-7NP_001369854.1 RRM_SRSF11_SREK1 11..87 CDD:409704
RRM_SF 159..245 CDD:418427 21/98 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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