DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17030 and vih

DIOPT Version :9

Sequence 1:NP_647941.1 Gene:CG17030 / 38591 FlyBaseID:FBgn0035584 Length:180 Species:Drosophila melanogaster
Sequence 2:NP_648582.1 Gene:vih / 44118 FlyBaseID:FBgn0264848 Length:178 Species:Drosophila melanogaster


Alignment Length:160 Identity:46/160 - (28%)
Similarity:79/160 - (49%) Gaps:16/160 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 PLMDG---PKRMNRELA-LMLEDKQNLQFRNLLVEPNNIYKWTGLLM-PVAPPYDKGAYKMEIDF 66
            |:.|.   .||:::||. ||:.:::.:   :...:..||:||.|.:. |....|....|::.:||
  Fly    26 PVKDNHAVSKRLHKELMNLMMANERGI---SAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDF 87

  Fly    67 PLDYPFKPPRIHINTRMYHLNVNERGQVCVPILEVEHWIPTTRIDQVL---QVLLATINDPQPEN 128
            |..||:..|.:...|..:|.||:.:|.:|:.||: :.|.....:..:|   |.||...|:..|.|
  Fly    88 PNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILK-DKWSALYDVRTILLSIQSLLGEPNNESPLN 151

  Fly   129 AWHIEMAGEYRNDPVRFFKMADAWVQKYSE 158
            |    .|....||...:.|..||:.:|:.:
  Fly   152 A----QAAMMWNDQKEYKKYLDAFYEKHKD 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17030NP_647941.1 COG5078 12..158 CDD:227410 44/150 (29%)
UQ_con 14..153 CDD:278603 42/143 (29%)
vihNP_648582.1 COG5078 31..166 CDD:227410 40/142 (28%)
UQ_con 36..172 CDD:278603 42/143 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24068
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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