DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and LGI1

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_005088.1 Gene:LGI1 / 9211 HGNCID:6572 Length:557 Species:Homo sapiens


Alignment Length:191 Identity:45/191 - (23%)
Similarity:80/191 - (41%) Gaps:44/191 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 LCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGD 320
            |||       |..::...:..|:..|:|:.....:|   :...|....:|.:|..|.|:.:.|.|
Human    54 LCE-------NARSIPRTVPPDVISLSFVRSGFTEI---SEGSFLFTPSLQLLLFTSNSFDVISD 108

  Fly   321 TVFAELWSLSELELDDNRIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQAN 385
            ..|..|..|..|.:::|.|:.||.....||.:|..|:|.||.|:.:...:.:|..:|.:::::. 
Human   109 DAFIGLPHLEYLFIENNNIKSISRHTFRGLKSLIHLSLANNNLQTLPKDIFKGLDSLTNVDLRG- 172

  Fly   386 KLETLTFYTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHC 446
                                        |.|.|||:|:|:.|....|     ..::||::|
Human   173 ----------------------------NSFNCDCKLKWLVEWLGHT-----NATVEDIYC 200

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 7/34 (21%)
LRR_8 183..243 CDD:290566
leucine-rich repeat 185..208 CDD:275380
leucine-rich repeat 209..232 CDD:275380
LRR_RI <225..416 CDD:238064 34/159 (21%)
LRR_8 232..291 CDD:290566 7/34 (21%)
leucine-rich repeat 233..256 CDD:275380 45/191 (24%)
leucine-rich repeat 257..280 CDD:275380 4/22 (18%)
leucine-rich repeat 281..304 CDD:275380 4/22 (18%)
LRR_8 304..363 CDD:290566 21/58 (36%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 8/22 (36%)
LRR_8 352..416 CDD:290566 9/63 (14%)
leucine-rich repeat 353..376 CDD:275380 7/22 (32%)
LRRCT 414..>450 CDD:214507 12/33 (36%)
LGI1NP_005088.1 leucine-rich repeat 71..92 CDD:275378 4/23 (17%)
LRR_8 91..151 CDD:404697 21/59 (36%)
LRR 1 92..113 7/20 (35%)
leucine-rich repeat 93..116 CDD:275378 8/22 (36%)
LRR 2 116..137 6/20 (30%)
leucine-rich repeat 117..140 CDD:275378 8/22 (36%)
LRR 3 140..161 6/20 (30%)
leucine-rich repeat 141..164 CDD:275378 7/22 (32%)
PCC 146..>221 CDD:188093 18/89 (20%)
leucine-rich repeat 165..177 CDD:275378 3/40 (8%)
EAR 1. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 225..267
EPTP 225..264 CDD:397689
EAR 2. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 271..313
EPTP 272..310 CDD:397689
EAR 3. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 317..364
EPTP 317..361 CDD:397689
EAR 4. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 366..415
EAR 5. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 419..462
EPTP 420..459 CDD:397689
EAR 6. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 464..506
EPTP 464..502 CDD:397689
EAR 7. /evidence=ECO:0000255|PROSITE-ProRule:PRU00075 510..552
EPTP 510..549 CDD:397689
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141330
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X486
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.930

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