DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and lrrc4.1

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_005164844.1 Gene:lrrc4.1 / 565021 ZFINID:ZDB-GENE-041210-129 Length:858 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064
LRR_8 183..243 CDD:290566
leucine-rich repeat 185..208 CDD:275380
leucine-rich repeat 209..232 CDD:275380
LRR_RI <225..416 CDD:238064
LRR_8 232..291 CDD:290566
leucine-rich repeat 233..256 CDD:275380
leucine-rich repeat 257..280 CDD:275380
leucine-rich repeat 281..304 CDD:275380
LRR_8 304..363 CDD:290566
leucine-rich repeat 305..328 CDD:275380
leucine-rich repeat 329..352 CDD:275380
LRR_8 352..416 CDD:290566
leucine-rich repeat 353..376 CDD:275380
LRRCT 414..>450 CDD:214507
lrrc4.1XP_005164844.1 LRRNT 43..77 CDD:214470
leucine-rich repeat 54..73 CDD:275380
leucine-rich repeat 75..98 CDD:275380
LRR_8 76..133 CDD:290566
LRR_RI 93..323 CDD:238064
leucine-rich repeat 99..122 CDD:275380
LRR_8 121..206 CDD:290566
leucine-rich repeat 123..146 CDD:275380
leucine-rich repeat 147..170 CDD:275380
leucine-rich repeat 171..195 CDD:275380
leucine-rich repeat 196..218 CDD:275380
LRR_8 218..277 CDD:290566
leucine-rich repeat 219..242 CDD:275380
leucine-rich repeat 243..266 CDD:275380
leucine-rich repeat 267..288 CDD:275380
IG_like 361..443 CDD:214653
Ig 372..443 CDD:299845
STOP 616..799 CDD:283000
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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