DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Con and lgr4

DIOPT Version :10

Sequence 1:NP_523930.3 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001340791.1 Gene:lgr4 / 558825 ZFINID:ZDB-GENE-111013-1 Length:971 Species:Danio rerio


Alignment Length:675 Identity:146/675 - (21%)
Similarity:220/675 - (32%) Gaps:228/675 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   124 DENHVPVQKAECWVFSEGLHQNDTTW-----------TRFYQQKRLRELKFVIQ----------- 166
            |.||:.....:.:   |||.|....|           :....|..|:.|...:.           
Zfish   140 DANHITSVPEDSF---EGLQQLRHLWLDDNSLTEVPISPLQHQSNLQALTLALNRITHIPDNAFA 201

  Fly   167 ----------NNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMA 221
                      :|.|:..|.......|.||.::.:.::.::|... |...||.|:.:..::|:|.:
Zfish   202 NLSSLVVLHLHNNRIQEIGKNCFNGLDNLETLDLNFNNLKIFPE-AIQMLPKLKELGFHSNNIAS 265

  Fly   222 LDQDAFANHIRLRELNLEHNQIFEMDRYAFRNL-------------------------------- 254
            :.:.||..:..||.::|..|.:..:...||:||                                
Zfish   266 IPEGAFCRNSLLRTIHLFDNPLSFVGTTAFQNLSDLHSLMLRGASMMQDFPSLTGTINLESLTLT 330

  Fly   255 ---------PLCERLF------LNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFRGLGN 304
                     .|||.|.      |:.|:|..|..  |....||..:||.||||..:....|:|:.:
Zfish   331 GTKIRSIPADLCEDLTVLRTVDLSYNDIEDLPS--FQGCVRLQDINLQHNQIKQIDRGTFQGMTS 393

  Fly   305 LNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALDGLNTLK---TLNLRNNLLKKI 366
            |.||.|:||.:.||....|..|.:|:.|:|..|.:..:....|..||.||   .:.|||.|:.|.
Zfish   394 LRVLDLSRNQIKFIHRDAFLSLSALTNLDLSLNSLASVPTAGLSALNQLKLTGNMELRNGLMSKT 458

  Fly   367 DNGLLRGTPALLSINVQANKLETLTFYTFQ----PIMDNLVNSTSELLVSDNK------------ 415
                   .|.|.||.|.         |.:|    ...|:.||...:    |.:            
Zfish   459 -------LPKLRSITVP---------YAYQCCAFVAYDSAVNPAED----DERRNAFGGEEDMER 503

  Fly   416 -------------------------------FIC------DCRLQWIFELKNRTRHLQLRDSLED 443
                                           |||      :| |........||..|.....|..
Zfish   504 IPMVMHCSPLPGAFKPCEHLLGSWMIRLTVWFICLVALLFNC-LVLAATFSPRTSSLSPSRFLVA 567

  Fly   444 LHCTLQEPKLSHFVDPVPPTILDVLNIGGFTAIGSNSASMGGVGNSVVG------SSYSGLTMDD 502
            |   |....|...|.....|:||.:..|.|...|....:  |.|..|||      |.::.|.:..
Zfish   568 L---LASANLLTGVYVAALTLLDTVTWGSFAEYGVWWET--GAGCQVVGFLAVFSSEWAVLLLAL 627

  Fly   503 S--------RKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKRQEEVKEKDLAAVAPAHKRYD 559
            :        |..:|.......||:|:             .|||:.........|.:||.|     
Zfish   628 AAVERCLAVRALMGKAGALRSRGERR-------------ERRRRFAIAALLLGLVSVAAA----- 674

  Fly   560 YYDDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVVGHNDVDVLMTSHSASGDALDILTTKNAIY 624
                   .:||.||..:...|.|   .|....||.:|.....|||.:.:....|:        :|
Zfish   675 -------CLSLYHGSAMGSPLCL---PFSEGSSPGLGFTVALVLMNTLAYLLSAV--------VY 721

  Fly   625 IKLFLLKPEMLPC---HDELSDPTE 646
            .:|:        |   ..:|:||.:
Zfish   722 TRLY--------CRLGRAQLADPEQ 738

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_523930.3 LRR <157..459 CDD:443914 92/425 (22%)
leucine-rich repeat 185..208 CDD:275380 4/22 (18%)
leucine-rich repeat 209..232 CDD:275380 5/22 (23%)
leucine-rich repeat 233..256 CDD:275380 8/63 (13%)
leucine-rich repeat 257..280 CDD:275380 8/28 (29%)
leucine-rich repeat 281..304 CDD:275380 9/22 (41%)
leucine-rich repeat 305..328 CDD:275380 10/22 (45%)
leucine-rich repeat 329..352 CDD:275380 6/22 (27%)
leucine-rich repeat 353..376 CDD:275380 7/25 (28%)
lgr4NP_001340791.1 LRR 1 58..82
leucine-rich repeat 64..85 CDD:275380
LRR 2 84..106
LRR 85..>452 CDD:443914 73/317 (23%)
leucine-rich repeat 86..109 CDD:275380
LRR 3 107..130
leucine-rich repeat 110..133 CDD:275380
LRR 4 131..154 3/16 (19%)
leucine-rich repeat 134..157 CDD:275380 6/19 (32%)
LRR 5 156..178 2/21 (10%)
leucine-rich repeat 158..181 CDD:275380 2/22 (9%)
LRR 6 179..202 3/22 (14%)
leucine-rich repeat 182..205 CDD:275380 2/22 (9%)
LRR 7 204..226 3/21 (14%)
leucine-rich repeat 206..229 CDD:275380 4/22 (18%)
LRR 8 227..250 5/23 (22%)
leucine-rich repeat 230..252 CDD:275380 4/22 (18%)
LRR 9 251..273 6/21 (29%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
LRR 10 275..297 6/21 (29%)
leucine-rich repeat 277..298 CDD:275380 6/20 (30%)
LRR 11 299..321 0/21 (0%)
LRR 12 322..344 2/21 (10%)
LRR 13 345..366 6/22 (27%)
leucine-rich repeat 348..369 CDD:275380 5/22 (23%)
LRR 14 367..390 9/22 (41%)
leucine-rich repeat 370..393 CDD:275380 9/22 (41%)
LRR 15 391..414 9/22 (41%)
leucine-rich repeat 394..415 CDD:275380 9/20 (45%)
LRR 16 416..438 5/21 (24%)
leucine-rich repeat 418..438 CDD:275380 5/19 (26%)
7tmA_LGR4 527..811 CDD:320483 58/262 (22%)
TM helix 1 528..554 CDD:320483 5/26 (19%)
TM helix 2 562..587 CDD:320483 6/27 (22%)
TM helix 3 607..637 CDD:320483 5/29 (17%)
TM helix 4 649..679 CDD:320483 11/54 (20%)
TM helix 5 698..727 CDD:320483 8/44 (18%)
TM helix 6 736..766 CDD:320483 1/3 (33%)
TM helix 7 779..804 CDD:320483
Blue background indicates that the domain is not in the aligned region.

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