DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and alrm

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_651393.1 Gene:alrm / 43074 FlyBaseID:FBgn0039332 Length:471 Species:Drosophila melanogaster


Alignment Length:443 Identity:93/443 - (20%)
Similarity:162/443 - (36%) Gaps:110/443 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 NARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMALDQDAFANHIR 232
            |:.:..||.::.:...:|..:.:|...:|..:...|.....|..:.|..|.:..:.::.|.....
  Fly    74 NSSIAKIPHLLFDTFPDLQVLRMENCSLETFEKPQFEGASNLMSLFLGYNRLKDIPKNIFLGADN 138

  Fly   233 LRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSE 297
            |..|:|:.||:.::..::|..|...:.|.|..|.:..:..|:|:.|.:|..||||.|:::.|...
  Fly   139 LATLHLQGNQLKQLGNHSFHALKEVKELSLAENQLEQISLGVFSGMRKLMDLNLAGNRLDALPRG 203

  Fly   298 IFRGLGNLNVLKLTRNNLNFIGDTVF-AELWSL----SELELDDNRIERIS-------------- 343
            :|....||..|.|.||..     |.| :||..|    ::|::..|..:.::              
  Fly   204 VFDRNLNLTKLNLARNRF-----TAFESELLKLQPVFTQLDISGNIFQELTLNFTMLDVAIAHSC 263

  Fly   344 -ERALDGLNTLKTLNLRNNLLKKIDN-----------------GLLRGTP-----ALLSINVQAN 385
             .|.|.....:..|:|.||.|:::.:                 |.|:|.|     :||.:|:.|.
  Fly   264 DLRRLTVYGVIHELDLHNNSLREMPHIPLAANVSSLDLSHNPLGNLQGNPLRRFTSLLRLNLSAT 328

  Fly   386 KLETLTFYTFQPIMDNLVNSTSELL---VSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDL--- 444
            ....|.        :.|....|.|.   :|.|.         |:.||     :.:.|||:.|   
  Fly   329 GAHELP--------EGLFKKQSHLQMLDISGNS---------IYSLK-----ITIFDSLKALQYF 371

  Fly   445 -------HCTLQEPKLSHFV---------DPVPPTILDVLNIGGFTAIGSNSASMGGVGNSVVGS 493
                   :|...:..:|.||         |...|.::|....|                   :..
  Fly   372 YFQQNNWNCDFLQLLMSSFVKRKDISFMEDITAPELVDDYVDG-------------------IAC 417

  Fly   494 SYSGLTMDDSRKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKRQEEVKEK 546
            .|.........:..||.:...|...|....:...:||.|..:..:..||:|.|
  Fly   418 WYESDKQSKKCESGGSDAAMELSVVRNEIKTFTELVEKKFVKVYRMLEEMKMK 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 30/122 (25%)
LRR_8 183..243 CDD:290566 12/59 (20%)
leucine-rich repeat 185..208 CDD:275380 4/22 (18%)
leucine-rich repeat 209..232 CDD:275380 4/22 (18%)
LRR_RI <225..416 CDD:238064 56/235 (24%)
LRR_8 232..291 CDD:290566 19/58 (33%)
leucine-rich repeat 233..256 CDD:275380 7/22 (32%)
leucine-rich repeat 257..280 CDD:275380 6/22 (27%)
leucine-rich repeat 281..304 CDD:275380 8/22 (36%)
LRR_8 304..363 CDD:290566 19/78 (24%)
leucine-rich repeat 305..328 CDD:275380 9/23 (39%)
leucine-rich repeat 329..352 CDD:275380 5/41 (12%)
LRR_8 352..416 CDD:290566 19/88 (22%)
leucine-rich repeat 353..376 CDD:275380 9/44 (20%)
LRRCT 414..>450 CDD:214507 9/45 (20%)
alrmNP_651393.1 LRR_RI 84..354 CDD:238064 63/291 (22%)
LRR_8 91..149 CDD:290566 12/57 (21%)
leucine-rich repeat 91..114 CDD:275380 4/22 (18%)
leucine-rich repeat 115..138 CDD:275380 4/22 (18%)
LRR_8 138..197 CDD:290566 19/58 (33%)
leucine-rich repeat 139..162 CDD:275380 7/22 (32%)
leucine-rich repeat 163..186 CDD:275380 6/22 (27%)
LRR_8 185..243 CDD:290566 20/62 (32%)
leucine-rich repeat 187..210 CDD:275380 8/22 (36%)
leucine-rich repeat 211..283 CDD:275380 17/76 (22%)
leucine-rich repeat 284..319 CDD:275380 5/34 (15%)
LRR_8 318..377 CDD:290566 17/80 (21%)
leucine-rich repeat 320..343 CDD:275380 6/30 (20%)
leucine-rich repeat 344..365 CDD:275380 7/34 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR45617
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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