DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and Lrrc24

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001129368.1 Gene:Lrrc24 / 362945 RGDID:1308720 Length:521 Species:Rattus norvegicus


Alignment Length:217 Identity:66/217 - (30%)
Similarity:94/217 - (43%) Gaps:33/217 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 LNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFR 300
            |.|:.|.|..:::.|...|.....|:|:||.:..|..|.|....||..|.|..|::..|....|.
  Rat    63 LFLQDNSIAHLEQGALAPLAALRHLYLHNNTLRALESGAFRAQPRLLELALTGNRLRGLRGGAFV 127

  Fly   301 GLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALDGLNTLKTLNLRNNLLKK 365
            ||..|.||.|..|.|..:.|..|..|..|.||.|.:|.||.:.::||.||::|..|:|       
  Rat   128 GLVQLRVLYLAGNQLAKLLDFTFLHLPRLQELHLQENSIELLEDQALAGLSSLALLDL------- 185

  Fly   366 IDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIFE-LK 429
                             ..|:|.|::....||:     :|...|.:::|.:.|||.|.|:.. :|
  Rat   186 -----------------SRNQLGTISKEALQPL-----SSLQVLRLTENPWRCDCALHWLGSWIK 228

  Fly   430 NRTRHLQLRDSLEDLHCTLQEP 451
            ...|.|.   |..|...|..||
  Rat   229 EGGRRLL---SSRDKKITCAEP 247

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 18/54 (33%)
LRR_8 183..243 CDD:290566 3/6 (50%)
leucine-rich repeat 185..208 CDD:275380
leucine-rich repeat 209..232 CDD:275380
LRR_RI <225..416 CDD:238064 53/179 (30%)
LRR_8 232..291 CDD:290566 18/54 (33%)
leucine-rich repeat 233..256 CDD:275380 6/19 (32%)
leucine-rich repeat 257..280 CDD:275380 7/22 (32%)
leucine-rich repeat 281..304 CDD:275380 8/22 (36%)
LRR_8 304..363 CDD:290566 23/58 (40%)
leucine-rich repeat 305..328 CDD:275380 9/22 (41%)
leucine-rich repeat 329..352 CDD:275380 11/22 (50%)
LRR_8 352..416 CDD:290566 11/63 (17%)
leucine-rich repeat 353..376 CDD:275380 3/22 (14%)
LRRCT 414..>450 CDD:214507 12/36 (33%)
Lrrc24NP_001129368.1 leucine-rich repeat 61..83 CDD:275380 6/19 (32%)
PPP1R42 63..>212 CDD:411060 52/177 (29%)
LRR_8 84..142 CDD:404697 21/57 (37%)
leucine-rich repeat 84..107 CDD:275380 7/22 (32%)
leucine-rich repeat 108..131 CDD:275380 8/22 (36%)
leucine-rich repeat 132..155 CDD:275380 9/22 (41%)
leucine-rich repeat 156..179 CDD:275380 11/22 (50%)
leucine-rich repeat 180..203 CDD:275380 8/51 (16%)
PCC 188..>259 CDD:188093 21/68 (31%)
Ig_3 267..357 CDD:404760
Ig strand A 267..271 CDD:409353
Ig strand A' 276..280 CDD:409353
Ig strand B 283..292 CDD:409353
Ig strand C 298..304 CDD:409353
Ig strand D 330..333 CDD:409353
Ig strand E 336..342 CDD:409353
Ig strand F 349..357 CDD:409353
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334999
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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