DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and Lrig2

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001101180.1 Gene:Lrig2 / 310753 RGDID:1309554 Length:1054 Species:Rattus norvegicus


Alignment Length:643 Identity:142/643 - (22%)
Similarity:229/643 - (35%) Gaps:197/643 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 YCTPDENHVPVQKAECWVFSEGLHQNDTTWTRFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKN 184
            |.....|.:...:|.|:....|                  .|..|..|..|:..||..:.: |.:
  Rat   170 YLNLSNNRITTLEAGCFDNLSG------------------SLLVVKLNRNRISMIPPKVFK-LPH 215

  Fly   185 LSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDR- 248
            |..:.::.::::||:...|..|..|..:.:..|.|..|...||.....:.||.||||.:..:.: 
  Rat   216 LQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTGVHKG 280

  Fly   249 --YAFRNL------------------PLCERLF---LNNNNISTLHEGLFADMARLTFLNLAHNQ 290
              |..|.|                  ..|:||.   |:.|.::.|.|..|..::.|..|||..|:
  Rat   281 WLYGLRMLQQLYVSQNAIEKISPDAWEFCQRLSALDLSYNQLTRLDESAFVGLSLLERLNLGDNR 345

  Fly   291 INVLTSEIFRGLGNLNVLKLTRNNLNF-IGDT--VFAELWSLSELELDDNRIERISERALDGLNT 352
            :..:...:||.|.||..|.|..|.::: |.|.  ||:.|.||::|.|..|||:.::::|..||.:
  Rat   346 VTHIADGVFRFLSNLQTLDLRNNEISWAIEDASEVFSGLKSLTKLILQGNRIKSVTQKAFVGLES 410

  Fly   353 LKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSELLVSDNKFI 417
            |:.|:|.||              |::||  |.|...       |..:..||.:||.||       
  Rat   411 LEYLDLNNN--------------AIMSI--QENAFS-------QTHLKELVLNTSSLL------- 445

  Fly   418 CDCRLQWIFE--LKNRTRHLQ---------------LRDSLEDLHCTLQEPKLSHFVDPVPPTIL 465
            |||.|:|:.:  :.|...|..               |...|:|..|       ..|:.|...|..
  Rat   446 CDCHLKWLLQWLVDNNFHHSVNVSCAHPEWLAGQSILNVDLKDFVC-------DDFLKPQIRTHP 503

  Fly   466 DVLNIGGFTAIGSNSASMGGVGNSVVGSSYSGLTMDDSRKHLGSRSRQALRGQRQFASSAENVVE 530
            :            |:.::.||..:::.::.|  :.|.....|..:..:.|     :....||.| 
  Rat   504 E------------NTVALRGVNVTLMCTAVS--SSDSPMSTLWRKDSEIL-----YDVDIENFV- 548

  Fly   531 SKMRRRRKRQEEVKEKDLAAVAPAHKRYDYYDDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVV 595
                  |.||::                            |..|:....|.|....|...|.   
  Rat   549 ------RYRQQD----------------------------GEALEYTSVLRLFSVNFTDEGK--- 576

  Fly   596 GHNDVDVLMTSHSASGDALDILTTKNAIYIKLFLLKP----------EMLPCHDELSDP------ 644
                ...::|:|..|..:.....|.|.  :..||..|          ..|.|..| ..|      
  Rat   577 ----YQCIVTNHFGSNYSQKAKLTVNE--MPSFLKTPMDLTIRTGAMARLECAAE-GHPTPQISW 634

  Fly   645 -----TELPLSR----------DLMDVRSNVGQDMS--TAGANSLAQGMTIIVSLVAL 685
                 |:.|.:|          |:..:.:...:||.  :..|.::|.|::...||..|
  Rat   635 QKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNIAGGLSANASLTVL 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 40/167 (24%)
LRR_8 183..243 CDD:290566 17/59 (29%)
leucine-rich repeat 185..208 CDD:275380 5/22 (23%)
leucine-rich repeat 209..232 CDD:275380 6/22 (27%)
LRR_RI <225..416 CDD:238064 64/217 (29%)
LRR_8 232..291 CDD:290566 22/82 (27%)
leucine-rich repeat 233..256 CDD:275380 9/43 (21%)
leucine-rich repeat 257..280 CDD:275380 8/25 (32%)
leucine-rich repeat 281..304 CDD:275380 8/22 (36%)
LRR_8 304..363 CDD:290566 25/61 (41%)
leucine-rich repeat 305..328 CDD:275380 9/25 (36%)
leucine-rich repeat 329..352 CDD:275380 9/22 (41%)
LRR_8 352..416 CDD:290566 17/63 (27%)
leucine-rich repeat 353..376 CDD:275380 5/22 (23%)
LRRCT 414..>450 CDD:214507 11/52 (21%)
Lrig2NP_001101180.1 LRR_RI <50..204 CDD:238064 9/51 (18%)
leucine-rich repeat 98..120 CDD:275380
LRR_8 119..178 CDD:290566 2/7 (29%)
leucine-rich repeat 121..144 CDD:275380
LRR_RI 136..398 CDD:238064 64/246 (26%)
leucine-rich repeat 145..167 CDD:275380
LRR_8 167..226 CDD:290566 13/74 (18%)
leucine-rich repeat 168..192 CDD:275380 5/39 (13%)
leucine-rich repeat 193..215 CDD:275380 7/22 (32%)
leucine-rich repeat 216..239 CDD:275380 5/22 (23%)
LRR_8 239..298 CDD:290566 15/58 (26%)
leucine-rich repeat 240..263 CDD:275380 6/22 (27%)
leucine-rich repeat 264..287 CDD:275380 7/22 (32%)
leucine-rich repeat 288..311 CDD:275380 2/22 (9%)
LRR_8 311..370 CDD:290566 20/58 (34%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
leucine-rich repeat 336..359 CDD:275380 8/22 (36%)
LRR_8 358..421 CDD:290566 25/76 (33%)
leucine-rich repeat 360..384 CDD:275380 8/23 (35%)
LRR_4 385..426 CDD:289563 18/56 (32%)
leucine-rich repeat 387..410 CDD:275380 9/22 (41%)
leucine-rich repeat 411..433 CDD:275380 11/44 (25%)
LRRCT 444..492 CDD:214507 13/61 (21%)
Ig 501..597 CDD:299845 23/156 (15%)
IG 503..597 CDD:214652 22/154 (14%)
I-set 601..691 CDD:254352 18/90 (20%)
Ig_1 618..692 CDD:143240 15/74 (20%)
I-set 695..782 CDD:254352
Ig 713..782 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334973
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.930

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