DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and Lgr5

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001100254.1 Gene:Lgr5 / 299802 RGDID:1307733 Length:907 Species:Rattus norvegicus


Alignment Length:412 Identity:109/412 - (26%)
Similarity:170/412 - (41%) Gaps:89/412 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   151 RFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLPFLERIILN 215
            ||.::.||       ..|| |.:||......|.:|..::::.:|:..|...|..||..|:.:.|:
  Rat    90 RFLEELRL-------AGNA-LTHIPKGAFAGLHSLKVLMLQNNQLRQVPEEALQNLRSLQSLRLD 146

  Fly   216 NNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMAR 280
            .|||..:....|:....||.|.|:.|.:.::...|||:|...:.:.|..|.|..:.:..|.:::.
  Rat   147 ANHISYVPPSCFSGLHSLRHLWLDDNALTDVPVQAFRSLSALQAMTLALNKIHHIADHAFGNLSS 211

  Fly   281 LTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISER 345
            |..|:|.:|:|:.|..:.|.||.:|..|.|..|||:.. .|....|.:|.||....|.|..|.||
  Rat   212 LVVLHLHNNRIHSLGKKCFDGLHSLETLDLNYNNLDEF-PTAIKTLSNLKELGFHSNNIRSIPER 275

  Fly   346 ALDGLNTLKTLNLRNNLLKKID---------------NGL--------LRGTPALLSINVQANKL 387
            |..|..:|.|::..:|.::.:.               ||.        |.||..|.|:.:...|:
  Rat   276 AFVGNPSLITIHFYDNPIQFVGISAFQHLPELRTLTLNGASQITEFPDLTGTATLESLTLTGAKI 340

  Fly   388 ETLTFYTFQPIMDNLVN----STSELLVSDNKFICDC--------RLQWIFELKNRT-------R 433
            .:|.    |.:.|.|.|    ..|..|:.|...:..|        |...|:|:|..|       |
  Rat   341 SSLP----QTVCDQLPNLQVLDLSYNLLEDLPSLSGCQKLQKIDLRHNEIYEIKGGTFQQLFNLR 401

  Fly   434 HLQL-RDSLEDLHCTLQEPKLSHFVDPVPPTI-LDVLNIGGFTAIGSNSASMGGVGNSVVGSSYS 496
            .|.| |:.:..:|        .:....:|..| ||         :.||..|      |...:...
  Rat   402 SLNLARNKIAIIH--------PNAFSTLPSLIKLD---------LSSNLLS------SFPVTGLH 443

  Fly   497 GLTMDDSRKHL---GSRSRQAL 515
            |||      ||   |:|:.|:|
  Rat   444 GLT------HLKLTGNRALQSL 459

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 39/139 (28%)
LRR_8 183..243 CDD:290566 17/59 (29%)
leucine-rich repeat 185..208 CDD:275380 6/22 (27%)
leucine-rich repeat 209..232 CDD:275380 6/22 (27%)
LRR_RI <225..416 CDD:238064 60/217 (28%)
LRR_8 232..291 CDD:290566 17/58 (29%)
leucine-rich repeat 233..256 CDD:275380 9/22 (41%)
leucine-rich repeat 257..280 CDD:275380 4/22 (18%)
leucine-rich repeat 281..304 CDD:275380 9/22 (41%)
LRR_8 304..363 CDD:290566 21/58 (36%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 10/22 (45%)
LRR_8 352..416 CDD:290566 19/90 (21%)
leucine-rich repeat 353..376 CDD:275380 8/45 (18%)
LRRCT 414..>450 CDD:214507 11/51 (22%)
Lgr5NP_001100254.1 LRRNT 33..70 CDD:214470
LRR 1 44..64
LRR 2 65..88