DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and Elfn1

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001099383.1 Gene:Elfn1 / 288512 RGDID:1308787 Length:829 Species:Rattus norvegicus


Alignment Length:228 Identity:57/228 - (25%)
Similarity:89/228 - (39%) Gaps:49/228 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 LNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERALD 348
            |.|..|:|..:........|||..|.||:|.:.:|.|..|:..::|..|:|..||:..::|..|.
  Rat    65 LRLNENRIRSVQYASLSRFGNLTYLNLTKNEIGYIEDGAFSGQFNLQVLQLGYNRLRNLTEGMLR 129

  Fly   349 GLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSELLVSD 413
            ||:.|:.|.|:.||::.:........|.:::|::..|:::.|...||..:     ...|...:..
  Rat   130 GLSKLEYLYLQANLIEVVMASAFWECPNIVNIDLSMNRIQQLGSGTFAGL-----TKLSVCEIYS 189

  Fly   414 NKFICDCR----LQWIFELKNRT-----------------------RHLQLRDSLEDLH--CT-- 447
            |.|.|.|.    |:|:....|.|                       ||...|..|..|.  ||  
  Rat   190 NPFYCSCELLGFLRWLAAFTNATQTHDRVQCESPPVYAGYFLLGQGRHGHQRSILSKLQSVCTEG 254

  Fly   448 ------LQEPK-------LSHFVDPVPPTILDV 467
                  |..|:       ..|...|.||...|:
  Rat   255 SYTAEVLGPPRPVPGRSQPGHSPPPPPPEPSDM 287

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 3/6 (50%)
LRR_8 183..243 CDD:290566
leucine-rich repeat 185..208 CDD:275380
leucine-rich repeat 209..232 CDD:275380
LRR_RI <225..416 CDD:238064 36/131 (27%)
LRR_8 232..291 CDD:290566 3/6 (50%)
leucine-rich repeat 233..256 CDD:275380
leucine-rich repeat 257..280 CDD:275380
leucine-rich repeat 281..304 CDD:275380 4/19 (21%)
LRR_8 304..363 CDD:290566 22/58 (38%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 9/22 (41%)
LRR_8 352..416 CDD:290566 13/63 (21%)
leucine-rich repeat 353..376 CDD:275380 5/22 (23%)
LRRCT 414..>450 CDD:214507 16/72 (22%)
Elfn1NP_001099383.1 LRR <44..>186 CDD:227223 35/125 (28%)
leucine-rich repeat 65..85 CDD:275378 4/19 (21%)
LRR_8 85..144 CDD:404697 22/58 (38%)
leucine-rich repeat 86..109 CDD:275378 8/22 (36%)
leucine-rich repeat 110..133 CDD:275378 9/22 (41%)
leucine-rich repeat 134..157 CDD:275378 5/22 (23%)
leucine-rich repeat 158..171 CDD:275378 2/12 (17%)
LRRCT 190..>228 CDD:214507 8/37 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334977
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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