DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Con and Lrig2

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001020238.1 Gene:Lrig2 / 269473 MGIID:2443718 Length:1054 Species:Mus musculus


Alignment Length:636 Identity:145/636 - (22%)
Similarity:228/636 - (35%) Gaps:183/636 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 YCTPDENHVPVQKAECWVFSEGLHQNDTTWTRFYQQKRLRELKFVIQ-NNARLDYIPTMIIEPLK 183
            |.....|.:...:|.|:                   ..|.:...|:: |..|:..||..:.: |.
Mouse   170 YLNLSNNRISTLEAGCF-------------------DNLSDSLLVVKLNRNRISMIPPKVFK-LP 214

  Fly   184 NLSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDR 248
            :|..:.::.::::||:...|..|..|..:.:..|.|..|...||.....:.||.||||.:..:::
Mouse   215 HLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTGVNK 279

  Fly   249 ---YAFRNL------------------PLCERLF---LNNNNISTLHEGLFADMARLTFLNLAHN 289
               |..|.|                  ..|:||.   |:.|.::.|.|..|..::.|..|||..|
Mouse   280 GWLYGLRMLQQLYMSQNAIEKISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDN 344

  Fly   290 QINVLTSEIFRGLGNLNVLKLTRNNLNF-IGDT--VFAELWSLSELELDDNRIERISERALDGLN 351
            ::..:...:||.|.||..|.|..|:::: |.|.  .|:.|.||::|.|..|||:.::::|..||.
Mouse   345 RVTHIADGVFRFLSNLQTLDLRNNDISWAIEDASEAFSGLKSLTKLILQGNRIKSVTQKAFIGLE 409

  Fly   352 TLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSELLVSDNKF 416
            :|:.|:|.||              |::||  |.|...       |..:..||.:||.||      
Mouse   410 SLEYLDLNNN--------------AIMSI--QENAFS-------QTHLKGLVLNTSSLL------ 445

  Fly   417 ICDCRLQWIFE--LKNRTRHLQLRDSLEDLHCTLQEPKLSHFVDPVPPTILDVLNIGGFTAIGSN 479
             |||.|:|:.:  :.|...|                   |..|....|..|              
Mouse   446 -CDCHLKWLLQWLVDNNFHH-------------------SVNVSCAHPEWL-------------- 476

  Fly   480 SASMGGVGNSVVGSSYSGLTMDD-----SRKHLGSRSRQALRGQR-QFASSAENVVESKMRR-RR 537
                  .|.|::.........||     .|.|  ..|..||||.. ....:|.:..:|.|.. .|
Mouse   477 ------AGQSILNVDLKDFVCDDFLKPQIRTH--PESTIALRGVNVTLTCTAVSSSDSPMSTIWR 533

  Fly   538 KRQEEVKEKDLAAVAPAHKRYDYYDDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVVGHNDVDV 602
            |..|.:.:.|:....    ||...|        |..|:....|.|....|...|.       ...
Mouse   534 KDSEILYDVDIENFV----RYRQQD--------GEALEYTSVLRLFSVNFTDEGK-------YQC 579

  Fly   603 LMTSHSASGDALDILTTKNAIYIKLFLLKP----------EMLPCHDELSDP-----------TE 646
            ::|:|..|..:.....|.|.  :..||..|          ..|.|..| ..|           |:
Mouse   580 IVTNHFGSNYSQKAKLTVNE--MPSFLKTPMDLTIRTGAMARLECAAE-GHPTPQISWQKDGGTD 641

  Fly   647 LPLSR----------DLMDVRSNVGQDMS--TAGANSLAQGMTIIVSLVAL 685
            .|.:|          |:..:.:...:||.  :..|.::|.|::...||..|
Mouse   642 FPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNIAGGLSANASLTVL 692

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 40/168 (24%)
LRR_8 183..243 CDD:290566 17/59 (29%)
leucine-rich repeat 185..208 CDD:275380 5/22 (23%)
leucine-rich repeat 209..232 CDD:275380 6/22 (27%)
LRR_RI <225..416 CDD:238064 63/217 (29%)
LRR_8 232..291 CDD:290566 22/82 (27%)
leucine-rich repeat 233..256 CDD:275380 9/43 (21%)
leucine-rich repeat 257..280 CDD:275380 8/25 (32%)
leucine-rich repeat 281..304 CDD:275380 8/22 (36%)
LRR_8 304..363 CDD:290566 24/61 (39%)
leucine-rich repeat 305..328 CDD:275380 8/25 (32%)
leucine-rich repeat 329..352 CDD:275380 9/22 (41%)
LRR_8 352..416 CDD:290566 17/63 (27%)
leucine-rich repeat 353..376 CDD:275380 5/22 (23%)
LRRCT 414..>450 CDD:214507 7/37 (19%)
Lrig2NP_001020238.1 LRR_RI <16..204 CDD:238064 8/52 (15%)
leucine-rich repeat 53..75 CDD:275378
LRR 1 75..96
LRR 2 97..118
leucine-rich repeat 98..120 CDD:275380
LRR_8 119..178 CDD:290566 2/7 (29%)
LRR 3 120..141
leucine-rich repeat 121..144 CDD:275380
LRR_RI <136..344 CDD:238064 43/193 (22%)
LRR 4 144..165
leucine-rich repeat 145..167 CDD:275380
LRR_8 167..226 CDD:290566 12/75 (16%)
LRR 5 167..188 4/36 (11%)
leucine-rich repeat 168..192 CDD:275380 5/40 (13%)
LRR 6 192..213 5/21 (24%)
leucine-rich repeat 193..215 CDD:275380 6/22 (27%)
LRR 7 215..236 4/20 (20%)
leucine-rich repeat 216..239 CDD:275380 5/22 (23%)
LRR_8 239..298 CDD:290566 15/58 (26%)
LRR 8 239..260 6/20 (30%)
leucine-rich repeat 240..263 CDD:275380 6/22 (27%)
LRR 9 263..284 6/20 (30%)
leucine-rich repeat 264..287 CDD:275380 7/22 (32%)
LRR 10 287..308 1/20 (5%)
leucine-rich repeat 288..311 CDD:275380 2/22 (9%)
LRR_8 311..370 CDD:290566 20/58 (34%)
LRR 11 311..332 7/20 (35%)
leucine-rich repeat 312..335 CDD:275380 6/22 (27%)
LRR 12 335..356 6/20 (30%)
leucine-rich repeat 336..359 CDD:275380 8/22 (36%)
LRR_8 358..421 CDD:290566 24/76 (32%)
LRR_4 359..401 CDD:289563 16/41 (39%)
LRR 13 359..381 7/21 (33%)
leucine-rich repeat 360..384 CDD:275380 7/23 (30%)
LRR_4 385..426 CDD:289563 18/56 (32%)
LRR 14 386..407 8/20 (40%)
leucine-rich repeat 387..410 CDD:275380 9/22 (41%)
LRR 15 410..431 10/43 (23%)
leucine-rich repeat 411..430 CDD:275380 10/34 (29%)
LRRCT 444..492 CDD:214507 15/93 (16%)
Ig 501..597 CDD:299845 25/116 (22%)
IG_like 503..597 CDD:214653 24/112 (21%)
I-set 601..691 CDD:254352 18/90 (20%)
Ig_1 618..692 CDD:143240 15/74 (20%)
I-set 695..782 CDD:254352
Ig 713..782 CDD:299845
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831242
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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