DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and Lgr4

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_766259.2 Gene:Lgr4 / 107515 MGIID:1891468 Length:951 Species:Mus musculus


Alignment Length:578 Identity:135/578 - (23%)
Similarity:217/578 - (37%) Gaps:138/578 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 GSTGYSGPMDSTGFCTRRRDMKLMCYCTPDENHVPVQKAEC-----WVFSEGL---------HQN 145
            ||.|.||.  :...|.      ..|.|..|      ::.:|     ....|||         ..|
Mouse    17 GSAGPSGA--APPLCA------APCSCDGD------RRVDCSGKGLTAVPEGLSAFTQALDISMN 67

  Fly   146 DTTW---TRFYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLP 207
            :.|.   ..|.....|.||:....:   |.:|....:..||.|..:.::.:|::.|.|.|...|.
Mouse    68 NITQLPEDAFKNFPFLEELQLAGND---LSFIHPKALSGLKELKVLTLQNNQLKTVPSEAIRGLS 129

  Fly   208 FLERIILNNNHIMALDQDAFANHIRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHE 272
            .|:.:.|:.|||.::.:|:|...::||.|.|:.|.:.|:......|||..:.|.|..||||::.:
Mouse   130 ALQSLRLDANHITSVPEDSFEGLVQLRHLWLDDNILTEVPVRPLSNLPTLQALTLALNNISSIPD 194

  Fly   273 GLFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDN 337
            ..|.:::.|..|:|.:|:|..|:...|.||.||..|.|..|||:.....:.| |.||.||....|
Mouse   195 FAFTNLSSLVVLHLHNNKIKSLSQHCFDGLDNLETLDLNYNNLDEFPQAIKA-LPSLKELGFHSN 258

  Fly   338 RIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANK-------------LET 389
            .|..|.:.|..|...|:|::|.:|.|..:.|........|.|:.::...             ||:
Mouse   259 SISVIPDGAFAGNPLLRTIHLYDNPLSFVGNSAFHNLSDLHSLVIRGASLVQWFPNLAGTVHLES 323

  Fly   390 LTFYTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRD-----------SLED 443
            ||      :....::|..:.|..:.|.:             ||..|...|           :||:
Mouse   324 LT------LTGTKISSIPDDLCQNQKML-------------RTLDLSYNDIRDLPSFNGCRALEE 369

  Fly   444 LHCTLQEPKLS-----HFVDPVPPTILDV-------LNIGGFTAIGSNSASMGGVGNSVVGSSYS 496
            :  :||..::|     .|.......|||:       ::.|.|       |.:|.:.|        
Mouse   370 I--SLQRNQISLIKETTFQGLTSLRILDLSRNLIREIHSGAF-------AKLGTITN-------- 417

  Fly   497 GLTMDDSRKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKRQEEVKEKDLAAVAPAHKRYDYY 561
               :|.|...|.|...:.|.|..|.          |:....:.::.:..:|.|.:......|.|.
Mouse   418 ---LDVSFNELTSFPTEGLNGLNQL----------KLVGNFQLKDALAARDFANLRSLSVPYAYQ 469

  Fly   562 DDNNGGMSLGHGLDLDDNLSLHKQGFYGAGSPVVGHNDVDVLMTSHSASGDALDILTT 619
            .....|......|:.:||            ||      .|..:|....:.||.:..:|
Mouse   470 CCAFWGCDSYANLNTEDN------------SP------QDHSVTKEKGATDAANATST 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 42/146 (29%)
LRR_8 183..243 CDD:290566 19/59 (32%)
leucine-rich repeat 185..208 CDD:275380 6/22 (27%)
leucine-rich repeat 209..232 CDD:275380 7/22 (32%)
LRR_RI <225..416 CDD:238064 59/203 (29%)
LRR_8 232..291 CDD:290566 20/58 (34%)
leucine-rich repeat 233..256 CDD:275380 8/22 (36%)
leucine-rich repeat 257..280 CDD:275380 7/22 (32%)
leucine-rich repeat 281..304 CDD:275380 9/22 (41%)
LRR_8 304..363 CDD:290566 22/58 (38%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 8/22 (36%)
LRR_8 352..416 CDD:290566 14/76 (18%)
leucine-rich repeat 353..376 CDD:275380 6/22 (27%)
LRRCT 414..>450 CDD:214507 8/46 (17%)
Lgr4NP_766259.2 LRRNT 29..61 CDD:214470 8/43 (19%)
LRR 1 58..79 3/20 (15%)
leucine-rich repeat 59..82 CDD:275380 3/22 (14%)
LRR 2 82..103 5/23 (22%)
LRR_RI 83..375 CDD:238064 86/316 (27%)
LRR_8 83..141 CDD:290566 16/60 (27%)
leucine-rich repeat 83..106 CDD:275380 6/25 (24%)
LRR 3 106..127 5/20 (25%)
leucine-rich repeat 107..130 CDD:275380 6/22 (27%)
LRR 4 130..151 7/20 (35%)
leucine-rich repeat 131..154 CDD:275380 7/22 (32%)
LRR 5 154..177 7/22 (32%)
leucine-rich repeat 155..178 CDD:275380 8/22 (36%)
LRR_8 177..237 CDD:290566 22/59 (37%)
LRR 6 178..199 7/20 (35%)
leucine-rich repeat 179..202 CDD:275380 7/22 (32%)
LRR 7 202..223 7/20 (35%)
leucine-rich repeat 203..226 CDD:275380 9/22 (41%)
LRR 8 226..247 8/21 (38%)
leucine-rich repeat 227..249 CDD:275380 8/22 (36%)
LRR_8 248..305 CDD:290566 17/56 (30%)
LRR 9 249..270 8/20 (40%)
leucine-rich repeat 250..273 CDD:275380 8/22 (36%)
LRR_8 272..355 CDD:290566 18/101 (18%)
LRR 10 273..294 6/20 (30%)
leucine-rich repeat 274..295 CDD:275380 6/20 (30%)
LRR 11 320..341 6/26 (23%)
leucine-rich repeat 321..344 CDD:275380 6/28 (21%)
LRR 12 344..365 4/33 (12%)
leucine-rich repeat 345..366 CDD:275380 4/33 (12%)
LRR_8 365..425 CDD:290566 16/79 (20%)
LRR 13 366..387 6/22 (27%)
leucine-rich repeat 367..390 CDD:275380 6/24 (25%)
LRR 388..410 CDD:197688 5/28 (18%)
LRR 14 390..411 5/27 (19%)
leucine-rich repeat 391..414 CDD:275380 6/29 (21%)
LRR 15 414..435 6/31 (19%)
leucine-rich repeat 415..438 CDD:275380 7/33 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 487..512 8/41 (20%)
7tm_1 556..801 CDD:278431
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831258
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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