DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and lrig1

DIOPT Version :10

Sequence 1:NP_523930.3 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_002938412.1 Gene:lrig1 / 100491453 XenbaseID:XB-GENE-494193 Length:1043 Species:Xenopus tropicalis


Alignment Length:425 Identity:112/425 - (26%)
Similarity:178/425 - (41%) Gaps:62/425 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 RLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMALDQDAFANHIRLR 234
            |:..:|..:.. |..|:.:.:..:::.:::...|..|..||.:.|..|:|..|...||....|::
 Frog   186 RISQLPVKVFR-LPRLTQLELNRNRIRLIEGLTFQGLESLEVLKLQRNNISKLTDGAFWGLSRMQ 249

  Fly   235 ELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIF 299
            .|:||:|.:.|::..:...|...::|.|::|:|||:....::...:|..|.|:||.:..|.....
 Frog   250 ILHLENNSLTEVNSGSLYGLLSLQQLHLSHNSISTISSAGWSFCQKLQELVLSHNNLTRLDEGSL 314

  Fly   300 RGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISE---RALDGLNTLKTLNLRNN 361
            ..||.|:||:|:.|:::.|.:..|..|.||..||||.|.|....|   .|..||.:|..|.|..|
 Frog   315 ADLGVLDVLRLSYNSISHIAEGAFKGLKSLRILELDHNEISGTIEDTNGAFIGLESLNKLTLFGN 379

  Fly   362 LLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIF 426
            .:|.:......|..:|..:|:..|.|.::....|.. |.||    .||:|..:.|:|||.|:|:.
 Frog   380 KIKSVAKRAFSGIESLEHLNLGENALRSVHSEAFGE-MKNL----KELVVGSSSFLCDCHLKWLP 439

  Fly   427 ELKNRTRHLQLRDSLEDLH-------CTLQEPKLSHFVDPVPPTILDVLNIGGFTAIGSNSASMG 484
            :... :|.||.:......|       .....|..|...|.:|...:.|          ....:|.
 Frog   440 QWLT-SRRLQTKVKASCAHPGSLNNTSIFSVPPRSFVCDDLPKPQIRV----------QPETTMA 493

  Fly   485 GVGN------SVVGSSYSGLTM----DDSRKHLGSRSRQALRGQRQFASSAENVVESKMRRRRKR 539
            .:|.      |...||.|.:|.    |:...|...        ...|||..|            |
 Frog   494 VLGKAIRFTCSAASSSPSPMTFAWKKDNEILHNAE--------VENFASGTE------------R 538

  Fly   540 QEEVKE----KDLAAVAPAHK-RYDYYDDNNGGMS 569
            :.||.|    ..|..:..||: ||.....|:.|.|
 Frog   539 EGEVTEYTTILHLRNLTFAHEGRYQCIITNDFGPS 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_523930.3 LRR <157..459 CDD:443914 84/298 (28%)
leucine-rich repeat 185..208 CDD:275380 3/22 (14%)
leucine-rich repeat 209..232 CDD:275380 8/22 (36%)
leucine-rich repeat 233..256 CDD:275380 6/22 (27%)
leucine-rich repeat 257..280 CDD:275380 6/22 (27%)
leucine-rich repeat 281..304 CDD:275380 7/22 (32%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 11/25 (44%)
leucine-rich repeat 353..376 CDD:275380 6/22 (27%)
lrig1XP_002938412.1 LRR <39..362 CDD:443914 52/176 (30%)
leucine-rich repeat 57..80 CDD:275378
leucine-rich repeat 104..127 CDD:275380
leucine-rich repeat 128..151 CDD:275380
leucine-rich repeat 152..199 CDD:275380 3/13 (23%)
leucine-rich repeat 200..223 CDD:275380 3/22 (14%)
leucine-rich repeat 224..247 CDD:275380 8/22 (36%)
leucine-rich repeat 248..295 CDD:275380 12/46 (26%)
leucine-rich repeat 272..292 CDD:275380 6/19 (32%)
leucine-rich repeat 296..319 CDD:275380 7/22 (32%)
leucine-rich repeat 320..343 CDD:275380 8/22 (36%)
LRR_8 343..405 CDD:404697 21/61 (34%)
leucine-rich repeat 344..370 CDD:275380 11/25 (44%)
leucine-rich repeat 371..394 CDD:275380 6/22 (27%)
leucine-rich repeat 395..413 CDD:275380 4/17 (24%)
LRRCT 429..477 CDD:214507 12/48 (25%)
leucine-rich repeat 445..471 CDD:275380 4/25 (16%)
Ig_3 481..568 CDD:464046 23/116 (20%)
IgI_LRIG1-like 587..677 CDD:409420
Ig strand A 587..590 CDD:409420
Ig strand A' 594..598 CDD:409420
Ig strand B 601..610 CDD:409420
Ig strand C 616..621 CDD:409420
Ig strand C' 624..626 CDD:409420
Ig strand D 634..638 CDD:409420
Ig strand E 642..649 CDD:409420
Ig strand F 655..663 CDD:409420
Ig strand G 666..677 CDD:409420
I-set 680..759 CDD:400151
Ig strand C 710..714 CDD:409353
Ig strand E 733..737 CDD:409353
Ig strand F 747..752 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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