DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and lrit3b

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_009305418.1 Gene:lrit3b / 100144406 ZFINID:ZDB-GENE-070424-130 Length:487 Species:Danio rerio


Alignment Length:195 Identity:51/195 - (26%)
Similarity:79/195 - (40%) Gaps:34/195 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 LNNNNISTLHEGLFADMARLTFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAEL 326
            |...::|.:..|.|:.|..|.:|.|.:|.|:||....|..|.                       
Zfish    95 LERTSVSRIFRGAFSAMPELLYLWLTYNSISVLHPRSFTNLS----------------------- 136

  Fly   327 WSLSELELDDNRIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETL- 390
             ||.||.||.|.:.......|..:..|:||.|.||.|.:|....:|....:..:::.:|:|.|| 
Zfish   137 -SLHELRLDGNLLSTFPWEGLRDMPRLRTLGLHNNRLARIPLLAVRYLRNVTYLDLSSNRLSTLA 200

  Fly   391 ----TFYTFQPIMDNLVNSTSELLVSDNKFICDCRLQWIFELKNRTRHLQLRDSLEDLHCTLQEP 451
                ..:.|..  .|....:..|.:.||.::|||||..:.::   :|..:....|.|...|..||
Zfish   201 NDLTALWLFSD--SNQTQRSFVLGLQDNPWVCDCRLSTLLDI---SRGPESSLVLLDRFLTCSEP 260

  Fly   452  451
            Zfish   261  260

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 9/28 (32%)
LRR_8 183..243 CDD:290566
leucine-rich repeat 185..208 CDD:275380
leucine-rich repeat 209..232 CDD:275380
LRR_RI <225..416 CDD:238064 40/158 (25%)
LRR_8 232..291 CDD:290566 9/28 (32%)
leucine-rich repeat 233..256 CDD:275380
leucine-rich repeat 257..280 CDD:275380 5/17 (29%)
leucine-rich repeat 281..304 CDD:275380 9/22 (41%)
LRR_8 304..363 CDD:290566 14/58 (24%)
leucine-rich repeat 305..328 CDD:275380 0/22 (0%)
leucine-rich repeat 329..352 CDD:275380 7/22 (32%)
LRR_8 352..416 CDD:290566 18/68 (26%)
leucine-rich repeat 353..376 CDD:275380 9/22 (41%)
LRRCT 414..>450 CDD:214507 10/35 (29%)
lrit3bXP_009305418.1 LRRNT 51..92 CDD:214470
leucine-rich repeat 69..89 CDD:275380
LRR_8 112..172 CDD:290566 23/83 (28%)
leucine-rich repeat 114..137 CDD:275378 9/46 (20%)
leucine-rich repeat 138..161 CDD:275378 7/22 (32%)
LRR_8 160..214 CDD:290566 14/55 (25%)
LRR_4 160..201 CDD:289563 13/40 (33%)
leucine-rich repeat 162..185 CDD:275378 9/22 (41%)
leucine-rich repeat 186..199 CDD:275378 2/12 (17%)
leucine-rich repeat 215..230 CDD:275378 3/14 (21%)
Ig 278..391 CDD:299845
I-set 279..391 CDD:254352
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574220
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.930

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