DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and elfn1b

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:XP_001920383.1 Gene:elfn1b / 100144401 ZFINID:ZDB-GENE-080327-21 Length:814 Species:Danio rerio


Alignment Length:522 Identity:96/522 - (18%)
Similarity:179/522 - (34%) Gaps:196/522 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 AVNSGSTGYSGPMDSTGFCTRRRDMKLMCYCTP----DENHVPVQKAECWVFSEGLHQNDTTWTR 151
            :::|||:|:.|.|.::.         |:|:...    ....|||.:.:||:. ||  :....|  
Zfish     7 SISSGSSGHGGGMVTSA---------LLCWAVALVFLSLTRVPVVQGDCWLI-EG--EKGFVW-- 57

  Fly   152 FYQQKRLRELKFVIQNNARLDYIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLPFLERIILNN 216
                     |....||....:.||       .:::|.:::                         
Zfish    58 ---------LAICSQNQPPYENIP-------MHINSTIVD------------------------- 81

  Fly   217 NHIMALDQDAFANHIRLRELNLEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARL 281
                                                       |.||.|.|.::|   |:.::| 
Zfish    82 -------------------------------------------LRLNENKIRSIH---FSSLSR- 99

  Fly   282 TFLNLAHNQINVLTSEIFRGLGNLNVLKLTRNNLNFIGDTVFAELWSLSELELDDNRIERISERA 346
                                .|||..|.||:|::::|.|..|:..::|..|::..|::..::|..
Zfish   100 --------------------FGNLTYLNLTKNDISYIEDGAFSAQFNLQVLQIGFNKMRNLTEGM 144

  Fly   347 LDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYTFQPIMDNLVNSTSELLV 411
            |.||..|:.|.|:.||::.:........||:.:|::..|:::.|...||:.:..   .:|.||..
Zfish   145 LRGLGRLQYLYLQANLIETVTANAFWECPAIENIDLSMNRIQQLDGATFRGLSK---LTTCELYA 206

  Fly   412 SDNKFICDCR----LQWIFELKNRTRHLQLRDS---LEDLHCTLQEPKLSHFVDPVPPTILDVLN 469
              |.|.|.|.    |:|:....|||......|:   ........|.|::..:.:           
Zfish   207 --NPFSCSCELLGFLRWLVAFPNRTSERMACDTPAGFSGYSLLSQNPRMPRYRN----------- 258

  Fly   470 IGGFTAIGS-----------NSASMGGVGNSVVGSSYSGL-----------TMDDSRKHLGSRSR 512
              .|.|:.|           :.:..||:...:...|..||           |:..|...|.|.:|
Zfish   259 --AFHALSSVCTDDNVTPYLHGSPDGGIPTRLPDLSPCGLDDCSSGTFPEETISISPTFLDSDAR 321

  Fly   513 QALRGQRQFASSA-------------------ENVVESKMRRRRKRQEEVKEKDLAAVAPAHKRY 558
            ..::.:....:||                   .|...:.::..:.::||::.::|    .:|..|
Zfish   322 PIMKLKEVTHTSAVITIQIPNPFRKMYILVLYNNSFFTDIQNLKSQREEIELQNL----KSHTNY 382

  Fly   559 DY 560
            .|
Zfish   383 TY 384

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 15/143 (10%)
LRR_8 183..243 CDD:290566 1/59 (2%)
leucine-rich repeat 185..208 CDD:275380 1/22 (5%)
leucine-rich repeat 209..232 CDD:275380 0/22 (0%)
LRR_RI <225..416 CDD:238064 41/190 (22%)
LRR_8 232..291 CDD:290566 8/58 (14%)
leucine-rich repeat 233..256 CDD:275380 0/22 (0%)
leucine-rich repeat 257..280 CDD:275380 7/22 (32%)
leucine-rich repeat 281..304 CDD:275380 0/22 (0%)
LRR_8 304..363 CDD:290566 20/58 (34%)
leucine-rich repeat 305..328 CDD:275380 8/22 (36%)
leucine-rich repeat 329..352 CDD:275380 7/22 (32%)
LRR_8 352..416 CDD:290566 16/63 (25%)
leucine-rich repeat 353..376 CDD:275380 5/22 (23%)
LRRCT 414..>450 CDD:214507 10/42 (24%)
elfn1bXP_001920383.1 leucine-rich repeat 82..102 CDD:275378 8/43 (19%)
LRR_8 102..161 CDD:316378 20/58 (34%)
leucine-rich repeat 103..126 CDD:275378 8/22 (36%)
leucine-rich repeat 127..150 CDD:275378 7/22 (32%)
leucine-rich repeat 151..174 CDD:275378 5/22 (23%)
leucine-rich repeat 175..188 CDD:275378 2/12 (17%)
PCC 179..>247 CDD:188093 17/72 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574212
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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