DRSC/TRiP Functional Genomics Resources

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Protein Alignment Con and lgi2

DIOPT Version :9

Sequence 1:NP_001246635.1 Gene:Con / 38590 FlyBaseID:FBgn0005775 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_001096394.1 Gene:lgi2 / 100124995 XenbaseID:XB-GENE-995134 Length:538 Species:Xenopus tropicalis


Alignment Length:548 Identity:101/548 - (18%)
Similarity:182/548 - (33%) Gaps:194/548 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   173 YIPTMIIEPLKNLSSIVIEYSQVEIVKSYAFANLPFLERIILNNNHIMALDQDAFANHIRLRELN 237
            ::|..:...:.:||.:...:.:   :|...||:||.|:.::||:|....:..||||....|..|.
 Frog    47 WVPKTVPGDISSLSLVNGTFPE---IKERMFAHLPTLQLLLLNSNAFTVIRDDAFAGLFHLEYLF 108

  Fly   238 LEHNQIFEMDRYAFRNLPLCERLFLNNNNISTLHEGLFADMARLTFLNLAHN------------- 289
            :|.|:|..:.|:|||.|.....|.|.||:|.:|...:|.|:..|..|:|..|             
 Frog   109 IEGNKIETIGRHAFRGLRDLTHLSLANNHIKSLPRDIFIDLDSLIELDLRGNRYECDCKAKWLFS 173

  Fly   290 -----------------------QINVLTS------------------------------EIFRG 301
                                   ::|.|.|                              ::|..
 Frog   174 WLKTTNSTVSDVLCVGHSDYQGRKLNELASFDSDCITTDFTVHPVLSYHSVSVDTFQYKNDVFVA 238

  Fly   302 LG-----NLNVLKLTRNNLNF------------------IGDTVF---AELWSLSEL-------- 332
            :.     |..:|:.....:||                  |.|.||   |:|:..|.:        
 Frog   239 IAQPSMENCMILEWDHIEMNFRSYDNITGQSIVGCKAILIDDQVFMVVAQLFGGSHIYKYDESWA 303

  Fly   333 ---ELDDNRIERISERALDGLNTLKTLNLRNNLLKKIDNGLLRGTPALLSINVQANKLETLTFYT 394
               :..|..:.:||:.     |.::...:.......|.:....|...:...|.:.       ||:
 Frog   304 KFTKFQDIEVSQISKP-----NDIELFQIEGETFFVIADSSKAGLTTVYKWNGKG-------FYS 356

  Fly   395 FQPIMDNLVNSTSELLVSDNK--FICDCR------LQWIFELKNRTRHLQLRDSLEDLHCTLQEP 451
            :|.:.:...::.:|.:|.:.|  .:...|      |||....|..|.|..:              
 Frog   357 YQSLHEWFRDTDAEFVVIEGKAHLVLSSRSQVPLILQWNKITKKFTPHGDI-------------- 407

  Fly   452 KLSHFVDPVPPTILDVLNIGGFTAIGSNSASMGGVGNSVVGSSYSGLT--MDDSR---------- 504
                      |.:.|||::..|               .:....|..||  :.||:          
 Frog   408 ----------PNMEDVLSVKSF---------------KMKDELYISLTRFIGDSKVMKWNNKQFV 447

  Fly   505 --KHLGSRSRQALR----GQRQFASSAENVVESKM---RRRRKRQEEVKE------KDLAAVAPA 554
              :.|.||...:|:    ..|.:.:...:...|::   .:.:|..|:.||      :...||:|.
 Frog   448 EVQALPSRGAMSLQPFTFKDRHYLALGSDYTFSQIYQWNKEKKTFEKFKEIYVQAPRSFTAVSPD 512

  Fly   555 HKRYDYYDDNNGGMSLGHGLDLDDNLSL 582
            .:.:.:.....|...:...:.:|  |||
 Frog   513 RRDFVFASSFKGNTQIFEHVIVD--LSL 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ConNP_001246635.1 LRR_RI <147..291 CDD:238064 38/153 (25%)
LRR_8 183..243 CDD:290566 19/59 (32%)
leucine-rich repeat 185..208 CDD:275380 6/22 (27%)
leucine-rich repeat 209..232 CDD:275380 8/22 (36%)
LRR_RI <225..416 CDD:238064 54/295 (18%)
LRR_8 232..291 CDD:290566 22/94 (23%)
leucine-rich repeat 233..256 CDD:275380 10/22 (45%)
leucine-rich repeat 257..280 CDD:275380 8/22 (36%)
leucine-rich repeat 281..304 CDD:275380 8/93 (9%)
LRR_8 304..363 CDD:290566 15/90 (17%)
leucine-rich repeat 305..328 CDD:275380 9/43 (21%)
leucine-rich repeat 329..352 CDD:275380 4/33 (12%)
LRR_8 352..416 CDD:290566 9/65 (14%)
leucine-rich repeat 353..376 CDD:275380 2/22 (9%)
LRRCT 414..>450 CDD:214507 8/43 (19%)
lgi2NP_001096394.1 LRR_8 103..161 CDD:290566 21/57 (37%)
LRR_4 103..142 CDD:289563 15/38 (39%)
leucine-rich repeat 104..127 CDD:275378 10/22 (45%)
LRR_4 128..>161 CDD:289563 11/32 (34%)
leucine-rich repeat 128..151 CDD:275378 8/22 (36%)
leucine-rich repeat 152..164 CDD:275378 4/11 (36%)
EPTP 212..253 CDD:281697 3/40 (8%)
EPTP 259..299 CDD:281697 8/39 (21%)
EPTP 304..350 CDD:281697 6/50 (12%)
EPTP 353..395 CDD:281697 9/48 (19%)
EPTP 400..442 CDD:281697 12/80 (15%)
EPTP 445..486 CDD:281697 6/40 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X486
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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