DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and AMT1;2

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_176658.1 Gene:AMT1;2 / 842786 AraportID:AT1G64780 Length:514 Species:Arabidopsis thaliana


Alignment Length:467 Identity:105/467 - (22%)
Similarity:160/467 - (34%) Gaps:129/467 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SGYVVLMIVQIIFLVLFWLFVRYEKT---ALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFG 70
            |.|:| ..:|:.|.:|....||.:.|   .|...:||. ||:.:.::                ||
plant    59 SAYLV-FAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAA-AGAISYYL----------------FG 105

  Fly    71 FLMTFLRKYGYSATGFT----LFMAALVVQWAVLMKGFLHMEGGKISLSLENIIDADIAAAVPLI 131
            |...|    |..:.||.    .|.|         :..:....|...|..|.....|..||.   |
plant   106 FAFAF----GTPSNGFIGRHHSFFA---------LSSYPERPGSDFSFFLYQWAFAIAAAG---I 154

  Fly   132 SMGALLGRTTPIQLLCMSVFEV-----------------ALFAANEYLALHVFSICDCGGSITVH 179
            :.|::..||..:..|..|.|..                 |..:.::...|......|..||..||
plant   155 TSGSIAERTQFVAYLIYSTFLTGFVYPTVSHWFWSSDGWASASRSDNNLLFGSGAIDFAGSGVVH 219

  Fly   180 AFGAYFGLAVALMLRPASDQ-NETGKLEGASYTSDIFAMIGTTFLWVYWPSFN-----SVLAD-- 236
            ..|...||..||:..|...: :.:|:.......|....::||..||..|..||     ::|..  
plant   220 MVGGIAGLCGALVEGPRIGRFDRSGRSVALRGHSASLVVLGTFLLWFGWYGFNPGSFLTILKGYD 284

  Fly   237 ---------GAGGERAILNTFLSLAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCN 292
                     .|.|..|:..|.....||..|.|....|..|.|.:|   |.|..|.|..|:.:.| 
plant   285 KSRPYYGQWSAVGRTAVTTTLSGCTAALTTLFSKRLLAGHWNVID---VCNGLLGGFAAITSGC- 345

  Fly   293 LLLGAHGAVLIGIIAGTVSVLGY-------RYLTPWMTANLRLHDTCGVHNLHGMPALISAIASA 350
            .::....|::.|.:|..| ::|:       :|..|...|  :||..||...|             
plant   346 AVVEPWAAIVCGFVASWV-LIGFNLLAKKLKYDDPLEAA--QLHGGCGAWGL------------- 394

  Fly   351 IYASMATVGEYQSELQD------IFPAMVGTNGTETKIMGGLGRNATSQAGYQLFGIAVTLLIAI 409
            |:..:....||.:|:..      :|             |||.|:...:|        .|.:::.:
plant   395 IFTGLFARKEYVNEIYSGDRPYGLF-------------MGGGGKLLAAQ--------IVQIIVIV 438

  Fly   410 GGGILTGAVLKY 421
            |...:|...|.|
plant   439 GWVTVTMGPLFY 450

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 91/418 (22%)
AMT1;2NP_176658.1 amt 53..479 CDD:273292 105/467 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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