DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rh50 and AMT1;4

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_194599.1 Gene:AMT1;4 / 828988 AraportID:AT4G28700 Length:504 Species:Arabidopsis thaliana


Alignment Length:536 Identity:117/536 - (21%)
Similarity:167/536 - (31%) Gaps:166/536 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SGYVVLMIVQIIFLVLFWLFVRYEKT---ALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFG 70
            |.|:| ..:|:.|.:|....||.:.|   .|...|||...|                 :.:..||
plant    58 SAYLV-FAMQLGFAMLCAGSVRAKNTMNIMLTNVIDAAAGG-----------------LFYYLFG 104

  Fly    71 FLMTFLRKYGYSATGF--------------TLFMAALVVQWAVLMKGFLHMEGGKISLSLENIID 121
            |...|    |..:.||              |......:.||.                       
plant   105 FAFAF----GSPSNGFIGKHFFGMYDFPQPTFDYPYFLYQWT----------------------- 142

  Fly   122 ADIAAAVPLISMGALLGRTTPIQLLCMSVFEVALF-----------------AANEYLALHVFSI 169
              .|.|...|:.|::..||..:..|..|.|...|.                 |.:|.| |....:
plant   143 --FAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPIVSHWFWSSDGWASPARSENL-LFQSGV 204

  Fly   170 CDCGGSITVHAFGAYFGLAVALMLRPASDQNETG----KLEGASYTSDIFAMIGTTFLWVYWPSF 230
            .|..||..||..|...||..||:..|...:...|    .|.|.|.|   ..::||..||..|..|
plant   205 IDFAGSGVVHMVGGIAGLWGALIEGPRIGRFGVGGKPVTLRGHSAT---LVVLGTFLLWFGWYGF 266

  Fly   231 NS------VLADG------------AGGERAILNTFLSLAAATVTTFVVSALVSHENKLDMVHVQ 277
            |.      ..|.|            |.|..|:..|.....||..|.|....:..:.|..|   |.
plant   267 NPGSFATIFKAYGETPGSSFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRLIDGYWNVTD---VC 328

  Fly   278 NSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPA 342
            |..|.|..|:.:.|: ::....|::.|.:|..| ::|...|    ...|:..|......|||...
plant   329 NGLLGGFAAITSGCS-VVEPWAALVCGFVAAWV-LMGCNRL----AEKLQFDDPLEAAQLHGGCG 387

  Fly   343 LISAIASAIYASMATVGEYQSELQDIFPAMVGTNGTETK----IMGGLGRNATSQAGYQLFGIAV 403
            ....|.:.::|....:.|       ||      .|...:    :|||.||         |....|
plant   388 AWGIIFTGLFAEKRYIAE-------IF------GGDPNRPFGLLMGGGGR---------LLAAHV 430

  Fly   404 TLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKEEYLNMLAKLLDDDAAATNSN 468
            ..::.|.|.:   :|...|.|..|.|                     |.:|....:|:.|..:..
plant   431 VQILVITGWV---SVTMGTLFFILHK---------------------LKLLRIPAEDEIAGVDPT 471

  Fly   469 SQSAANFNWRPFLLRN 484
            |.....:.:....:||
plant   472 SHGGLAYMYTEDEIRN 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 92/423 (22%)
AMT1;4NP_194599.1 amt 52..478 CDD:273292 115/525 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.