DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and AMT1;1

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_193087.1 Gene:AMT1;1 / 826983 AraportID:AT4G13510 Length:501 Species:Arabidopsis thaliana


Alignment Length:477 Identity:111/477 - (23%)
Similarity:160/477 - (33%) Gaps:139/477 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFGFLM 73
            |.|:|.. :|:.|.:|....||.:.|...:..:..||.:..              :.:..||:..
plant    49 SAYLVFS-MQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGG--------------LFYYLFGYAF 98

  Fly    74 TFLRKYGYSATGFTLFMAALVVQWAVLMKGFLHMEGGKISLSLENIIDAD-----------IAAA 127
            .|    |..:.||.                      ||....|::|..|.           .|.|
plant    99 AF----GSPSNGFI----------------------GKHYFGLKDIPTASADYSNFLYQWAFAIA 137

  Fly   128 VPLISMGALLGRTTPIQLLCMSVFEVAL------------------FAANEYLALHVFSICDCGG 174
            ...|:.|::..||..:..|..|.|....                  |..:..|.....:| |..|
plant   138 AAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASPFRTDGDLLFSTGAI-DFAG 201

  Fly   175 SITVHAFGAYFGLAVALMLRPASDQNETG----KLEGASYTSDIFAMIGTTFLWVYW-----PSF 230
            |..||..|...||..||:..|...:.:.|    .|.|.|.:   ..::||..||..|     .||
plant   202 SGVVHMVGGIAGLWGALIEGPRLGRFDNGGRAIALRGHSAS---LVVLGTFLLWFGWYGFNPGSF 263

  Fly   231 NSVLAD----------GAGGERAILNTFLSLAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGV 285
            |.:|..          .|.|..|:..|.....||..|.|....|..|.|..|   |.|..|.|..
plant   264 NKILVTYETGTYNGQWSAVGRTAVTTTLAGCTAALTTLFGKRLLSGHWNVTD---VCNGLLGGFA 325

  Fly   286 AVGTVCNLLLGAHGAVLIGIIAGTVSVLG-------YRYLTPWMTANLRLHDTCGVHNLHGMPAL 343
            |:...|: ::....|::.|.:|..| :||       .:|..|...|  :||..||...|      
plant   326 AITGGCS-VVEPWAAIICGFVAALV-LLGCNKLAEKLKYDDPLEAA--QLHGGCGAWGL------ 380

  Fly   344 ISAIASAIYASMATVGEYQSELQDIFPAMVG-TNGTETKIMGGLGRNATSQAGYQLFGIAVTLLI 407
               |.:|::|.       :..|..|:....| .:|.   .|||         |.:|.|..:..:|
plant   381 ---IFTALFAQ-------EKYLNQIYGNKPGRPHGL---FMGG---------GGKLLGAQLIQII 423

  Fly   408 AIGGGILTGAVLKYTNFRNLKK 429
            .|.|.:   :....|.|..|||
plant   424 VITGWV---SATMGTLFFILKK 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 95/422 (23%)
AMT1;1NP_193087.1 amt 43..467 CDD:273292 111/477 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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