DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rh50 and AMT1;3

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_189073.1 Gene:AMT1;3 / 822018 AraportID:AT3G24300 Length:498 Species:Arabidopsis thaliana


Alignment Length:491 Identity:114/491 - (23%)
Similarity:168/491 - (34%) Gaps:151/491 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 SGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFGFLM 73
            |.|:| ..:|:.|.:|....||.:.|...:..:..||.:..              :.:..||:..
plant    53 SAYLV-FAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGG--------------LFYYLFGYAF 102

  Fly    74 TFLRKYGYSATGF--------------TLFMAALVVQWAVLMKGFLHMEGGKISLSLENIIDADI 124
            .|    |.|:.||              |...:..:.|||                         .
plant   103 AF----GGSSEGFIGRHNFALRDFPTPTADYSFFLYQWA-------------------------F 138

  Fly   125 AAAVPLISMGALLGRTTPIQLLCMSVFEVALF-------------------AANEYLALHVFS-- 168
            |.|...|:.|::..||..:..|..|.|.....                   :|::.|    ||  
plant   139 AIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSPDGWASPFRSADDRL----FSTG 199

  Fly   169 ICDCGGSITVHAFGAYFGLAVALMLRPASDQNETG----KLEGASYTSDIFAMIGTTFLWVYWPS 229
            ..|..||..||..|...||..||:..|...:.|.|    .|.|.|.:   ..::||..||..|..
plant   200 AIDFAGSGVVHMVGGIAGLWGALIEGPRRGRFEKGGRAIALRGHSAS---LVVLGTFLLWFGWYG 261

  Fly   230 FN--------------SVLADGAGGERAILNTFLSLAAATVTTFVVSALVS-HENKLDMVHVQNS 279
            ||              |.....:|..|..:||.||...|.:||.....|:| |.|..|   |.|.
plant   262 FNPGSFTKILVPYNSGSNYGQWSGIGRTAVNTTLSGCTAALTTLFGKRLLSGHWNVTD---VCNG 323

  Fly   280 TLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLG-------YRYLTPWMTANLRLHDTCGVHNL 337
            .|.|..|:...|: ::....|::.|.:|..| ::|       .:|..|...|  :||..||...|
plant   324 LLGGFAAITAGCS-VVEPWAAIVCGFMASVV-LIGCNKLAELVQYDDPLEAA--QLHGGCGAWGL 384

  Fly   338 HGMPALISAIASAIYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFGIA 402
                         |:..:....:|   |.:::.|..|.  .....|||.|:    ..|.||    
plant   385 -------------IFVGLFAKEKY---LNEVYGATPGR--PYGLFMGGGGK----LLGAQL---- 423

  Fly   403 VTLLIAIGGGILTGA----VLKYTNFRNLKKDEHHQ 434
            |.:|:.:|....|..    :||..|.  |:..|.|:
plant   424 VQILVIVGWVSATMGTLFFILKRLNL--LRISEQHE 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 99/431 (23%)
AMT1;3NP_189073.1 amt 47..471 CDD:273292 114/491 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.