DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and rhcgb

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_001307311.1 Gene:rhcgb / 792274 ZFINID:ZDB-GENE-040426-2595 Length:488 Species:Danio rerio


Alignment Length:482 Identity:201/482 - (41%)
Similarity:291/482 - (60%) Gaps:44/482 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 VLMIVQIIFLVLFWLFVRYEKTA----------LPLAIDAEDAGSANEHVSKYPQFQDIQVMIFI 67
            |..:.|:..::||.:||||.:.|          ..:..|.|     |:...:||.|||:.||||:
Zfish    26 VCFVWQVSMIILFGVFVRYNEEADTNWVYTKKEKNITSDIE-----NDFYFRYPSFQDVHVMIFV 85

  Fly    68 GFGFLMTFLRKYGYSATGFTLFMAALVVQWAVLMKGFLHMEG--GKISLSLENIIDADIAAAVPL 130
            |||||||||::|.:.|.||...:||..:|||:||:|:....|  |||.:.:|.:|:||...|..|
Zfish    86 GFGFLMTFLKRYSFGAVGFNFLIAAFGLQWALLMQGWFSPLGDDGKIKIGIEKLINADFCVASCL 150

  Fly   131 ISMGALLGRTTPIQLLCMSVFEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALML-R 194
            |:.||:||:.:|:|||.|::|.:.|:|..|::.|.|.:..|.|||:.:|.||||:||:::.:| |
Zfish   151 IAYGAVLGKVSPVQLLVMTLFGITLYAVEEFIILSVLNAKDAGGSMVIHTFGAYYGLSISRVLYR 215

  Fly   195 PASDQNETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLAD-GAGGERAILNTFLSLAAATVTT 258
            |  :.|::..:.|:.|.||:||||||.|||::||||||.:.: |.|..||.:||:|:||:..:||
Zfish   216 P--NLNKSNHMNGSVYHSDVFAMIGTLFLWMFWPSFNSAICNHGDGQHRAAINTYLALASTVLTT 278

  Fly   259 FVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGYRYLTPWMT 323
            ..:|::.....||||||:|||||||||||||....:|..:|::::|...|.:|.|||.||||::.
Zfish   279 VAISSMFEKTGKLDMVHIQNSTLAGGVAVGTAAEFMLMPYGSLIVGFFCGIISTLGYIYLTPFLE 343

  Fly   324 ANLRLHDTCGVHNLHGMPALISAIASAIYASMATVGEY-QSELQDIFPAMVGTNGTETKIMGGLG 387
            ..|::.||||:||||.||.:|..|..||.|:.|:...| ...|::|| :..|:|.|         
Zfish   344 ERLKIQDTCGIHNLHAMPGVIGGIVGAISAAAASKEVYGDLGLENIF-SFEGSNVT--------- 398

  Fly   388 RNATSQAGYQLFGIAVTLLIAIGGGILTGAVLKYTNFRNLKKDEH-HQDEHYWEVPAAENKEEYL 451
            |..|.|.|||...:.|.|...||||...|.|||...:.: ..||| ..||.|||||  |::|..:
Zfish   399 RLPTVQGGYQAAALCVALCFGIGGGTFVGLVLKLPIWGD-PADEHCFNDEMYWEVP--EDEESII 460

  Fly   452 --------NMLAKLLDDDAAATNSNSQ 470
                    :|:.....::...||...|
Zfish   461 PPVLSYNNHMIPNNKHEEMRETNFAEQ 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 173/371 (47%)
rhcgbNP_001307311.1 Ammonium_transp 73..432 CDD:275788 172/370 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596271
Domainoid 1 1.000 362 1.000 Domainoid score I902
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 383 1.000 Inparanoid score I2002
OMA 1 1.010 - - QHG54631
OrthoDB 1 1.010 - - D311058at33208
OrthoFinder 1 1.000 - - FOG0000589
OrthoInspector 1 1.000 - - otm24460
orthoMCL 1 0.900 - - OOG6_101421
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.910

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