DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and Rhd

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_071950.1 Gene:Rhd / 60414 RGDID:620451 Length:422 Species:Rattus norvegicus


Alignment Length:440 Identity:137/440 - (31%)
Similarity:226/440 - (51%) Gaps:57/440 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFGFLMTFLRKYGY 81
            :|:.|::||:..:..:    |:..|       ::.::.|...||:.::..:|||||.:..|::|:
  Rat    20 LQVTFILLFYFLIGQD----PIQAD-------HKFMAIYQVIQDLTLVAALGFGFLSSSFRRHGW 73

  Fly    82 SATGFTLFMAALVVQWAVLMKGFLH--MEGGKIS------LSLENIIDADIAAAVPLISMGALLG 138
            |:..|:.||.||.||..:|:..||:  ::...|.      ||::.   |.|:....|||.||:||
  Rat    74 SSVAFSFFMLALGVQGTILLDYFLNWVLDWNMIKNPFSPFLSIQR---ATISTLPLLISAGAVLG 135

  Fly   139 RTTPIQLLCMSVFEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALML-----RPASD 198
            :...:||..|.:.|...|.|.......||.|.|....:..|.|||||||.||..|     |...:
  Rat   136 KVNLVQLAVMVLVEAMTFGAIRVADKKVFRIEDHIIMMYGHVFGAYFGLTVAWWLSKSLPRRRHE 200

  Fly   199 QNETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERAILNTFLSLAAATVTTFVVSA 263
            ..:|.|:: .:.:|.:|||:||.|||::|||.||.|.:|...:.|:.||:.:||.:|||...:||
  Rat   201 NAQTEKVQ-MTTSSSLFAMLGTLFLWIFWPSINSALLEGTKKKNAVFNTYYALAVSTVTATSMSA 264

  Fly   264 LVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGYRYLTPWMTANLRL 328
            |...:.|::|||:.|:.||||||||....|:.....|:::|:.||.:|:.|.:  .|.:..:..|
  Rat   265 LSHPKGKINMVHIHNAVLAGGVAVGAPSCLISSPWIAMVLGLTAGLISIWGAK--CPQVCLSDLL 327

  Fly   329 HDTCGVHNLHGMPALISAIASAIYASMATVGEYQ-SELQDIFPAMVGTNGTETKIMGGLGRNATS 392
            .:..|:|...|:|.|:.|:.   |..:..:.|.: |.|..:         |:|          .:
  Rat   328 LNPSGIHYTFGLPGLLGALT---YYCLHIIAESRPSNLWIV---------TQT----------IT 370

  Fly   393 QAGYQLFGIAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVP 442
            ..|...|.:|:.::.    |:|||.:|....:|.....::..|:.:||.|
  Rat   371 DVGALSFAMAMGMVT----GLLTGCLLSVKVWRAPHAVKYFDDQAFWEFP 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 126/380 (33%)
RhdNP_071950.1 Ammonium_transp 46..397 CDD:275788 126/382 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354046
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3796
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311058at33208
OrthoFinder 1 1.000 - - FOG0000589
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.850

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