DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and rhd

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_001019990.1 Gene:rhd / 554272 ZFINID:ZDB-GENE-051213-1 Length:423 Species:Danio rerio


Alignment Length:470 Identity:163/470 - (34%)
Similarity:252/470 - (53%) Gaps:74/470 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 HSPAAKVSGYVVLMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANE-HVSKYPQFQDIQVMI 65
            ::|:.:....:|..:::.:||:||..:|:.||        .|...|.:| .|..|..|||:.|||
Zfish     5 YAPSLRSRLPLVAFLLETLFLLLFVFWVKIEK--------QEYRRSESEPFVHSYADFQDVHVMI 61

  Fly    66 FIGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVLMKGFL----HMEGGKISLSLENIIDADIAA 126
            |:|||||.|||.:||.|.:||.:.:||:.|||||||.|||    ....|:|.:|::::|:|:::.
Zfish    62 FMGFGFLATFLVRYGLSGSGFNVLLAAMAVQWAVLMNGFLLPQHRHHRGQIHISMKSVIEAELST 126

  Fly   127 AVPLISMGALLGRTTPIQLLCMSVFEVALFAANEYL---ALH---VFSICDCGGSITVHAFGAYF 185
            |..||::||:.|:|.|:|||.||:.||..|..|:::   .||   ::||      :.:|.||:.|
Zfish   127 ASALIAIGAVHGKTNPVQLLLMSLVEVTGFVVNQWILRTLLHADALYSI------MLLHIFGSLF 185

  Fly   186 GLAVALML-----RPASDQNETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGGERA-- 243
            |:.|:.:|     :|..::.:|.:..|      :|||.||.|:|::||||||.|. .:..|||  
Zfish   186 GVMVSWVLHREGIKPHHEKEKTDRKTG------LFAMFGTLFMWMFWPSFNSALL-SSRWERALR 243

  Fly   244 ---ILNTFLSLAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGI 305
               |..|:||||.:.|....||.|.|.:.|::|||||:|.|:.|||:|.....:.....|::||.
Zfish   244 LTVIYGTYLSLAVSVVVAMSVSMLTSSKGKMNMVHVQSSALSAGVAIGVAMTAVSEPWVAMVIGF 308

  Fly   306 IAGTVSVLGYRYLTPWMTANLRLHDTCGVHNLHGMPALISAIASAI--YASMATVGEYQSELQDI 368
            .|..:|.||:||:...|......||||||.|:|.:|.::...|...  .|||.            
Zfish   309 CASLLSGLGFRYMKNHMLFAFECHDTCGVLNVHTIPGILGWFAHLCLRLASME------------ 361

  Fly   369 FPAMVGTNGTETKIMGGLGRNATSQAGYQLFGIAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHH 433
                              |..|...|.|.:..:.:||.:.:..|:.||.|||::.:|..:..:..
Zfish   362 ------------------GTVAVQFAVYHICVLLITLCVCLVMGVATGIVLKWSIWRPQQDRKCF 408

  Fly   434 QDEHYWEVPAAENKE 448
            .|:.:||.|....|:
Zfish   409 DDQAFWEFPNLVTKK 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 144/388 (37%)
rhdNP_001019990.1 Ammonium_transp 49..351 CDD:275788 128/314 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596273
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3796
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54631
OrthoDB 1 1.010 - - D311058at33208
OrthoFinder 1 1.000 - - FOG0000589
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.860

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