DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and Rhcg

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:XP_038961559.1 Gene:Rhcg / 293048 RGDID:727859 Length:520 Species:Rattus norvegicus


Alignment Length:498 Identity:206/498 - (41%)
Similarity:302/498 - (60%) Gaps:52/498 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 VVLMIVQIIFLVLFWLFVRY----------EKTALPLAIDAEDAGSANEHVSKYPQFQDIQVMIF 66
            :..:|:|:..:|||.:||||          ||....::.|.|     ||...:||.|:|:..|:|
  Rat    36 ITCLILQVTMVVLFGVFVRYDIQADAHWWLEKKRKNISSDVE-----NEFYYRYPSFEDVHAMVF 95

  Fly    67 IGFGFLMTFLRKYGYSATGFTLFMAALVVQWAVLMKGFLH-MEGGKISLSLENIIDADIAAAVPL 130
            :|||||||||::||:||.||...:||..:|||:||:|:.| .|.|.|.||:||:|.||...|...
  Rat    96 VGFGFLMTFLQRYGFSAVGFNFLLAAFGIQWALLMQGWFHFFEEGHILLSVENLIQADFCVASTC 160

  Fly   131 ISMGALLGRTTPIQLLCMSVFEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVA-LMLR 194
            ::.||:||:.:|:|||.|:.|:|.||..||::.|::....|.|||:|:|.|||||||.|. ::.|
  Rat   161 VAFGAVLGKISPMQLLIMTFFQVTLFTVNEFILLNLIEAKDAGGSMTIHTFGAYFGLTVTWILYR 225

  Fly   195 PASDQNETGKLEGASYTSDIFAMIGTTFLWVYWPSFNSVLA-DGAGGERAILNTFLSLAAATVTT 258
            ...:|::  :.:.:.|.||:||||||.|||:|||||||..: .|....||.|||:|||||:.:||
  Rat   226 KNLEQSK--QRQSSVYHSDLFAMIGTLFLWIYWPSFNSASSFHGDTQHRAALNTYLSLAASVLTT 288

  Fly   259 FVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGYRYLTPWMT 323
            ..||:::..:.||||||:||:||||||.|||...::|..:||:::|...|.:|.||:.||:|::.
  Rat   289 VAVSSVIHKKGKLDMVHIQNATLAGGVGVGTAAEMMLTPYGALIVGFFCGILSTLGFAYLSPFLE 353

  Fly   324 ANLRLHDTCGVHNLHGMPALISAIASAI---YASMATVGEYQSELQDIFPAMVGTNGTETKIMGG 385
            :.||:.||||:|||||:|.:|..|..|:   |:|....||         |.:|.:.|     .||
  Rat   354 SRLRIQDTCGIHNLHGIPGIIGGIVGAVTAAYSSPDVYGE---------PGIVHSFG-----FGG 404

  Fly   386 LGRNATS--QAGYQLFGIAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEVPAAENKE 448
            ...:.|.  |...|:||:.::|.:|:.|||:.|.:||...:.....:...:|..|||||      
  Rat   405 YKADWTKRMQGRSQIFGLLLSLAMALVGGIIVGFILKLPFWGQASDENCFEDAIYWEVP------ 463

  Fly   449 EYLNMLAKLLDDDAAATNSNSQSAANFNWRPFLLRNWNA-IVP 490
            |.:|.:  .:.:|.|..:|.|...|    .|.:|...:| |||
  Rat   464 EEVNTV--YIPEDLAHKHSTSLVPA----IPLVLSTPSASIVP 500

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 172/374 (46%)
RhcgXP_038961559.1 Ammonium_transp 84..459 CDD:413553 173/390 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354045
Domainoid 1 1.000 370 1.000 Domainoid score I873
eggNOG 1 0.900 - - E1_KOG3796
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 383 1.000 Inparanoid score I1974
OMA 1 1.010 - - QHG54631
OrthoDB 1 1.010 - - D311058at33208
OrthoFinder 1 1.000 - - FOG0000589
OrthoInspector 1 1.000 - - otm44576
orthoMCL 1 0.900 - - OOG6_101421
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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