DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and amt-2

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_502496.3 Gene:amt-2 / 186047 WormBaseID:WBGene00000134 Length:515 Species:Caenorhabditis elegans


Alignment Length:422 Identity:91/422 - (21%)
Similarity:156/422 - (36%) Gaps:106/422 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 IVQIIFLVLF-----WLFVRYEKTALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFG-FLMT 74
            :|:.:|.|:|     |:| .|..|          .|.:...:.:|           :||| |...
 Worm    68 MVKNVFDVIFGGLAYWMF-GYGLT----------FGDSKHQLGRY-----------VGFGDFFFD 110

  Fly    75 FLRKYGYSAT-----GFTLFMAALVVQWAVLMKGFLHMEGGKISLSLENIIDADIAAAVPLISMG 134
            ..|.....:|     .::||:..:                 ..:.:...|:.|.::..:.|.|. 
 Worm   111 PERVSDDDSTDEKGISYSLFIFQM-----------------SFATTTSTIVSAGMSERIHLKSH- 157

  Fly   135 ALLGRTTPIQLLCMSVFEVALF--AANEYL-----ALHVFSICDCGGSITVHAFGAYFGLAVALM 192
                        |...|.:.|.  .|..::     ...:..:.|..|...||..|...||...|.
 Worm   158 ------------CFISFFITLVHSVAGHWVWDQEGVFRMMGVVDSAGCSAVHLVGGVSGLVATLY 210

  Fly   193 LRPASDQNETGKLEGASYTSD-IFAMIGTTFLWVYWPSFNS----VLADG--AGGERAILNTFLS 250
            |:|.  :|...| .|....|| ..|::|...:|..|.:||:    .:..|  ..|.|:.:.|.|:
 Worm   211 LKPR--RNRFAK-NGIRTVSDPTKAILGFLMIWWGWLAFNTSSNYAVTHGQWTEGMRSAVGTILA 272

  Fly   251 LAAATVTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGY 315
            .|...|.|.:::.|.:.:.::||  :.:..||..||....| |......|.|:|.|..::::..|
 Worm   273 SAGGGVVTVIITRLSTKKIQMDM--LIDGMLASLVASTGGC-LYFTPWQATLVGAIGSSLALAAY 334

  Fly   316 RYLTPWMTANLRLHDTCGVHNLHGMPALISAIASAI--YASMATVGEYQSELQDIFPAMVGTNGT 378
            . :|.|    |::.|..||..:|.:.::...||.||  |......|..:.:.|           |
 Worm   335 P-VTEW----LKIDDPVGVFPVHVVGSIWGMIAPAIFVYRRPMNFGPPECDFQ-----------T 383

  Fly   379 ETKIMGGLGRNATSQAGYQLFGIAVTLLIAIG 410
            ..:|.|.|     ...|:.|..:...:::.||
 Worm   384 SDEINGLL-----YGGGFYLLFLQSFVILVIG 410

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 82/378 (22%)
amt-2NP_502496.3 Ammonium_transp 35..452 CDD:250217 91/422 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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