DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and amt-4

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:NP_508783.2 Gene:amt-4 / 180728 WormBaseID:WBGene00000136 Length:577 Species:Caenorhabditis elegans


Alignment Length:409 Identity:84/409 - (20%)
Similarity:140/409 - (34%) Gaps:119/409 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 KYGYSATGFTLFMAALVVQWAVLMKGFLHMEGGKI------SLSLENIIDADIAAA--------- 127
            |..:|......|:.::.:...::..||..:|.|.:      ::.::|::|:.||..         
 Worm    21 KEDFSENDNAFFLCSMSLIIFLMQCGFAFLEAGAVRSKNTTNILIKNLLDSCIAIVGYWALGWAL 85

  Fly   128 ----VPLISMGALLG---------------------RTTPIQLLCMSVFEVALFA---------- 157
                .|..::|..:|                     ..|...::..:|.|...||          
 Worm    86 AFGDCPNNTIGLFVGYSEFFLANFSNYPKFFFQYVFAATSATIVSGAVAERCEFANYITYCSVIS 150

  Fly   158 -------------ANEYLALHVFS------ICDCGGSITVHAFGAYFGLAVALMLR------PAS 197
                         ...::||.:.|      ..|..||..||..|.......|.|:.      |..
 Worm   151 TLVYPILTHWGWHPKGWMALGITSGVINTHYDDFAGSGVVHLCGGSISFLAAYMIGPRIGRFPED 215

  Fly   198 DQNETGKLEGASYTSDIFAMIGTTFLWVYWPSFN-----SVLADGAGG--ERAILNTFLSLAAAT 255
            |.:|..::.|.|..   ||.:|...|...:.:||     .::..|.|.  ..|::||.||.|.|.
 Worm   216 DDDECDEILGHSVP---FAALGGFILMFGFLAFNGGSMADIVKPGEGHIVALAMVNTILSGAFAA 277

  Fly   256 VTTFVVSALVSHENKLDMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGYRYLTP 320
            :|..:...|  :..|..::...|:.|||.||....|| .:.....:.:|:.||.:    |..|:.
 Worm   278 LTYLIAHYL--YHGKWTLLLTINACLAGMVASCAGCN-KMEPWACIWVGVGAGLI----YLGLSK 335

  Fly   321 WMTANLRLHDTCGVHNLH---GMPALISAI----ASAIYASMATVGEYQSELQDIFPAMVGTNGT 378
            .| ..|::.|......:|   |...|.|..    ...:|:...|:|.             .||| 
 Worm   336 LM-VRLKIDDPLDAFAVHAGGGFWGLTSVAFIGHDGVVYSIGNTIGG-------------ATNG- 385

  Fly   379 ETKIMGGLGRNATSQAGYQ 397
                 |.....|.:|.|:|
 Worm   386 -----GDQIAQAFAQLGWQ 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 84/409 (21%)
amt-4NP_508783.2 amt 30..448 CDD:273292 82/400 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D910733at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

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