DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rh50 and rhd

DIOPT Version :9

Sequence 1:NP_001369039.1 Gene:Rh50 / 38589 FlyBaseID:FBgn0028699 Length:501 Species:Drosophila melanogaster
Sequence 2:XP_002936645.3 Gene:rhd / 100038092 XenbaseID:XB-GENE-486532 Length:467 Species:Xenopus tropicalis


Alignment Length:431 Identity:141/431 - (32%)
Similarity:232/431 - (53%) Gaps:43/431 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LMIVQIIFLVLFWLFVRYEKTALPLAIDAEDAGSANEHVSKYPQFQDIQVMIFIGFGFLMTFLRK 78
            ::::|..|:::|....:::.|  |.|          :::.|||.|||:.|:|.:|||||...|:|
 Frog    17 ILLLQTTFILIFLHCFQHDYT--PNA----------KYIQKYPAFQDVNVIIILGFGFLFGSLKK 69

  Fly    79 YGYSATGFTLFMAALVVQWAVLMKGFLHMEGGKISLSLENIIDADIAAAVPLISMGALLGRTTPI 143
            :.:|...|...:.||.:|||:::..|| .:..|.|::|.::....:.....|||.|.:||:..|:
 Frog    70 FVFSGVAFNFLITALGIQWAIIVDSFL-FQSTKPSINLHSLCKGLMDVVPVLISSGVVLGKVNPV 133

  Fly   144 QLLCMSVFEVALFAANEYLALHVFSICDCGGSITVHAFGAYFGLAVALMLRPASDQNETGK-LEG 207
            ||:.|:..|:.:|..|.|:......:......:.||.|||||||||:.::...:..|:..| .|.
 Frog   134 QLIMMAAIEIPVFCVNRYIMETHLKMETQVSMMHVHIFGAYFGLAVSWLITLPTISNKVNKEKEK 198

  Fly   208 ASYTSDIFAMIGTTFLWVYWPSFNSVLADGAGG-ERAILNTFLSLAAATVTTFVVSALVSHENKL 271
            :...||||:|:||.|:|::|||:||:..:.... :.||.||:.|||.:.||.|.||||::...||
 Frog   199 SDRMSDIFSMLGTLFMWMFWPSYNSLWLEKHNEIKNAIYNTYFSLATSAVTVFSVSALLNPTGKL 263

  Fly   272 DMVHVQNSTLAGGVAVGTVCNLLLGAHGAVLIGIIAGTVSVLGYRYLT-PWMTANLRLHDTCGVH 335
            .|..:.|:.|||||::|....:|.....|::||::.|.:|.||:.|.. |..|.:| :|||||||
 Frog   264 QMRIIHNAVLAGGVSIGFTAYMLQYPWIAMIIGLLVGLISTLGFHYFQGPLNTVSL-VHDTCGVH 327

  Fly   336 NLHGMPALISAIASAIYASMATVGEYQSELQDIFPAMVGTNGTETKIMGGLGRNATSQAGYQLFG 400
            ...|:|.|..:|.   |..:....:::|.....:.|:.|                       :..
 Frog   328 YTFGLPGLFGSIT---YVILIITADFRSTAIQSYQAVTG-----------------------VAC 366

  Fly   401 IAVTLLIAIGGGILTGAVLKYTNFRNLKKDEHHQDEHYWEV 441
            |.:||.:::..||:||.:||...::..|:.....|:.||||
 Frog   367 ICLTLALSLVTGIITGFLLKCRLWKAPKEWHFFHDQPYWEV 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rh50NP_001369039.1 Ammonium_transp 55..422 CDD:413553 128/369 (35%)
rhdXP_002936645.3 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D311058at33208
OrthoFinder 1 1.000 - - FOG0000589
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11730
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X200
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.020

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